Protein Info for PS417_10770 in Pseudomonas simiae WCS417

Annotation: transglycosylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1349 PF01464: SLT" amino acids 20 to 118 (99 residues), 65.9 bits, see alignment 1.2e-22

Best Hits

Predicted SEED Role

"Phage protein inside capsid D"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U0J8 at UniProt or InterPro

Protein Sequence (1349 amino acids)

>PS417_10770 transglycosylase (Pseudomonas simiae WCS417)
MNSKDEYAQVLANGTPYDSMIRQEADREGIPYDFAHKLIFNESRFKTEAKSPTGPLGLGQ
FTEATGKAYGLMTPEDRMDPQKAIPAVMRHLKDLKGAYGGDLLKAALAYNQGQGRLGAPQ
LAAFDQGDFSKISPEGQTYMRNLLDVSGDSPSRKYFDSMGVTDPGIHPKAKAVSFEDATQ
GLTANNPIHVGQDLPGLGSMGLKGGEAPVTQPDYLSMAKPEKTFFEGTGDATKASVMTSP
IPSILRYATQETVDPLDWVNPTDTSSWTRDDFDMIRKEGVDPQYFGFIMDYSKGKRANLP
QAIAMAKENAGYEARINGAGAGAQIVGGFISAGVDPLTYAPIPGATGTRLVSRMAQGAVY
GSAGAVASEGLREAATGIEGHYGTALVGGALFGAGATALFDRAAQRAVKAPREEVSDDLL
EKTLAMHGESALPNERFDLHPEMESFDNNPFAGPAIRLEARETARQTGMDDPSRFPWLAG
EAPENIGGIDVVPHPSEPGAVRLQDGSILSASNPLNPMTLRDAEQFMPTEQAAKGVSMGG
FTEIGYTLLRSENEAVRNIGGQLFRSPTGTVSGSNGKFGATASDIIERTASQDHVTYNKM
SEQLLEAIKDPQFATQGGGRQVHMDMVNRRVAEAIEDSTGTKAAQLTPGERKMMETVRAH
YDRKADYLAAPAQFGNRHARAILPETRHAGSYIPNVYSTAAKALHLRRFGDQEGLQHAIS
ESWLASYAARPHVKARVDKFLTDQATREGRVLDPADLQAAVEDYATRKAFGIAKSDDFDG
SNLLAVGDQGSVPGSMGLASNNFLEGRHLFDSDMAVPLSDGTQFAVNDLREFDLGRITPS
YDRRVNGDIGIMGATGRTTGELLHDISKVKASSKTEKAALEESIKILTGRARREPEGALA
TTARILSDLSFVSKNAYMGVQSIAEVAGMVTKGHTRMLLKGVPLLRDMTRWGSKISANDL
RDMHSIVFGRELDNHIRPSRIDIIERLRNQADVNPFLANVLGSIKFATQETSAWSPFTKF
LTESSNYIADAGRSGVLSDLVDHVLAGRKSGLFEPQRLHSMSITPEQFEGIKASIREHMA
MGKDGKYTIKDRAALQRDPRTMDMWRMGDKIAHETILRPHALSSADTVAYGAGVKMAMQF
KNFTMRSVNSRLVRGYHDATKNGRAIDQTMQAVLSTGLAVSTYVAMKYSQAAGMPKDQRE
GFLKSSLDPKMLAYAGLSRSSHIGAPLGLLNIVAAPFGFDQGAAVRSSILPRGAKEKPEQ
GAMKYSPTQDKRYTGFLGRVSEQVPAMGVLANGYQTGYNAFGALGSDSRRADQEYMTGVF
NGLRGLVPNDPVTQKLLLMMMESQGVEIR