Protein Info for GFF2112 in Hydrogenophaga sp. GW460-11-11-14-LB1
Annotation: 2-keto-4-pentenoate hydratase (EC 4.2.1.80)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K01617, 4-oxalocrotonate decarboxylase [EC: 4.1.1.77] (inferred from 34% identity to bpf:BpOF4_12615)Predicted SEED Role
No annotation
MetaCyc Pathways
- 2-amino-3-carboxymuconate semialdehyde degradation to 2-hydroxypentadienoate (2/4 steps found)
- 3-chlorocatechol degradation III (meta pathway) (2/4 steps found)
- catechol degradation to 2-hydroxypentadienoate II (2/4 steps found)
- orthanilate degradation (2/5 steps found)
- protocatechuate degradation III (para-cleavage pathway) (2/5 steps found)
- 2-aminophenol degradation (1/4 steps found)
- 4-amino-3-hydroxybenzoate degradation (2/6 steps found)
- 2,3-dihydroxybenzoate degradation (1/5 steps found)
- 2-nitrobenzoate degradation I (2/7 steps found)
- catechol degradation II (meta-cleavage pathway) (2/7 steps found)
- L-tryptophan degradation IX (5/12 steps found)
- L-tryptophan degradation XII (Geobacillus) (5/12 steps found)
- meta cleavage pathway of aromatic compounds (3/10 steps found)
- 4-chloronitrobenzene degradation (1/9 steps found)
- 4-nitrotoluene degradation II (1/9 steps found)
- 2,2'-dihydroxybiphenyl degradation (1/10 steps found)
- toluene degradation IV (aerobic) (via catechol) (3/13 steps found)
- superpathway of aerobic toluene degradation (10/30 steps found)
- superpathway of aromatic compound degradation via 2-hydroxypentadienoate (14/42 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 4.1.1.77
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (256 amino acids)
>GFF2112 2-keto-4-pentenoate hydratase (EC 4.2.1.80) (Hydrogenophaga sp. GW460-11-11-14-LB1) MRHEWIEGLRQAARTGVPWAVDPTTLACDLDKAYALQAEHLRQVLAERDDAVVGAKLSVT SAPALERLGLRAPLIGPILRSRRHTSGATLPRSDFMVCVVEAEVGFRLGRDIEGSLSREE LLDAIDAVFPAIEVADSRYARWAEAPAPAIVADLAYAGAWVRGADFANWRELDLRALPVR LHRDGELAREGHSSAVLGDPVEALARALAEAARHGRVLRAGTLVSTGTCTAPWPLDGGGH LSADFGPLGRVELTLS