Protein Info for GFF2112 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: 2-keto-4-pentenoate hydratase (EC 4.2.1.80)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 256 PF01557: FAA_hydrolase" amino acids 98 to 254 (157 residues), 43.2 bits, see alignment E=2e-15

Best Hits

KEGG orthology group: K01617, 4-oxalocrotonate decarboxylase [EC: 4.1.1.77] (inferred from 34% identity to bpf:BpOF4_12615)

Predicted SEED Role

No annotation

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 4.1.1.77

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (256 amino acids)

>GFF2112 2-keto-4-pentenoate hydratase (EC 4.2.1.80) (Hydrogenophaga sp. GW460-11-11-14-LB1)
MRHEWIEGLRQAARTGVPWAVDPTTLACDLDKAYALQAEHLRQVLAERDDAVVGAKLSVT
SAPALERLGLRAPLIGPILRSRRHTSGATLPRSDFMVCVVEAEVGFRLGRDIEGSLSREE
LLDAIDAVFPAIEVADSRYARWAEAPAPAIVADLAYAGAWVRGADFANWRELDLRALPVR
LHRDGELAREGHSSAVLGDPVEALARALAEAARHGRVLRAGTLVSTGTCTAPWPLDGGGH
LSADFGPLGRVELTLS