Protein Info for GFF2111 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 554 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 40 to 61 (22 residues), see Phobius details amino acids 68 to 92 (25 residues), see Phobius details amino acids 98 to 122 (25 residues), see Phobius details amino acids 133 to 151 (19 residues), see Phobius details amino acids 163 to 184 (22 residues), see Phobius details amino acids 186 to 206 (21 residues), see Phobius details amino acids 211 to 231 (21 residues), see Phobius details amino acids 247 to 265 (19 residues), see Phobius details amino acids 284 to 304 (21 residues), see Phobius details TIGR00704: Na/Pi-cotransporter II-related protein" amino acids 5 to 310 (306 residues), 213.8 bits, see alignment E=2.2e-67 PF02690: Na_Pi_cotrans" amino acids 16 to 150 (135 residues), 110.7 bits, see alignment E=5.7e-36 amino acids 162 to 230 (69 residues), 34.8 bits, see alignment E=1.6e-12 PF01895: PhoU" amino acids 345 to 421 (77 residues), 25.7 bits, see alignment E=1.2e-09

Best Hits

KEGG orthology group: K03324, phosphate:Na+ symporter (inferred from 80% identity to xau:Xaut_4223)

Predicted SEED Role

"Sodium-dependent phosphate transporter" in subsystem Phosphate metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (554 amino acids)

>GFF2111 hypothetical protein (Xanthobacter sp. DMC5)
MSFSVTLLDLAGFAALLLWGIHMVQSGVMRALGPRLRMVLGHALAGPLRGFCAGAVVTTL
LQSSTATALMVSSFTAVGLVALVPALAAMLGANIGTSLIVQALSFNVAALAPAAFLGGLI
LFRRGAGTSMRDFGRVLIGLGLIVLALHALVDLLRPLEDAPSIRMLLGAIATVPLLDVML
AAILTWAVHSSVAVVLITASLAAQGVVPPNAAIALVLGANFGSAIAPVVDAMGKDDPAAM
RLPMGNMINRAVGVALGVAFIEPVGRQMVLWQPDLARVAVDFHTLFNIVTALVFLPLLGP
FARLLEWLYPGRELADDPTRPRYLAPAVSETPVVALGAATREAMRLADALEEMLDTASRA
LLDGARRHIAETRHGDDVLDRLNREIRAYLAMLDPDDLSLADRRRVEEILTFSANLEQAA
DVVCGRLMAEAGKRLKRGIAFSTTEEREISALIERLKANVRLAASLFMTADPRAARLLAL
EKAAFRESETTAARLHFDRLRHGLAAQAEASGLSADIVRDLKLVNSHVVAAAAYPVLARS
GELRETRLADPECR