Protein Info for PS417_10625 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 transmembrane" amino acids 17 to 35 (19 residues), see Phobius details amino acids 70 to 89 (20 residues), see Phobius details amino acids 108 to 129 (22 residues), see Phobius details amino acids 136 to 155 (20 residues), see Phobius details amino acids 162 to 183 (22 residues), see Phobius details amino acids 189 to 210 (22 residues), see Phobius details amino acids 253 to 273 (21 residues), see Phobius details amino acids 280 to 303 (24 residues), see Phobius details amino acids 313 to 331 (19 residues), see Phobius details amino acids 334 to 357 (24 residues), see Phobius details amino acids 366 to 388 (23 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 89% identity to pfs:PFLU2172)

Predicted SEED Role

"FIG00960888: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UDS7 at UniProt or InterPro

Protein Sequence (390 amino acids)

>PS417_10625 membrane protein (Pseudomonas simiae WCS417)
MKTFITETRARRSRVDLTVLMLGFASMVLVLWVALSNQWSWPGYAEMVASLPHPVAWLRW
IVGDISEVAFYKHELASLGLLSGAYLAWWASKHGKAWQGFSISYGTGLWPWLVTSSLLGL
MLSNLLWGWSVTAQTWQPTFAAFVSLPAAMVLMFGGGWKVAVNGAVLGALLVTPICMLIV
NFVCVPLGLPVVIGNVVGMAIGSVIAFVLCRRVPSLVSSDYIAPAKPAPARPPTYGIVWS
LRRVLADFSEAPFFGNELASLGLLAGVLVAYALNPISPAYGSGLVLPLLAAQALTSALGV
AIWRKQWMKRGWYPTYVPLVSVVPAAVLTHGGSWTVIASSALLGALIAPPLASAIAGRLP
VHFHPYIGNVTSMALSTLMIVPLVGWLIKM