Protein Info for GFF2069 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 386 transmembrane" amino acids 13 to 34 (22 residues), see Phobius details amino acids 44 to 62 (19 residues), see Phobius details amino acids 82 to 105 (24 residues), see Phobius details amino acids 140 to 160 (21 residues), see Phobius details amino acids 167 to 189 (23 residues), see Phobius details amino acids 195 to 215 (21 residues), see Phobius details amino acids 227 to 249 (23 residues), see Phobius details amino acids 269 to 288 (20 residues), see Phobius details amino acids 308 to 325 (18 residues), see Phobius details amino acids 332 to 354 (23 residues), see Phobius details PF10129: OpgC_C" amino acids 7 to 357 (351 residues), 324.8 bits, see alignment E=6.3e-101

Best Hits

Predicted SEED Role

"OpgC protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (386 amino acids)

>GFF2069 hypothetical protein (Xanthobacter sp. DMC5)
VSQSGQRLVSIDFWRGFALLTIFINHIPGHVFGAFTYRNFGFSDAAELFVFLAGISAAFA
YLRPFSAGERVRTTARVWMRAFTLYAAHLVLVVMSVVVVGGFVVLTGDERMLEWMHLDII
PQYPLESLVGIGLLTYQPGYLNILPLYVGLLLLAPILLLLARRSLGLALVVSLTLYLVTQ
IADLALPVWPGPGGWFFNPLAWQLLFTCGLVIGALMDRGLRSAAHRVLDVAAPLYLLAAL
VWAVLGYPVTPDLSPVPPFLWDFDKTNLALPRLLHVLALAYCVSRLPLEAWLKKSASAAP
LILMGRHALPVFCLGTVLSLGAQVVRPLVDGALAVDLLIVAAGFSLQWSLAWALEWQARG
RKPTQASSLQATPGAASPAPAFAHGQ