Protein Info for GFF2068 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Regulatory protein, LuxR:Tetratricopeptide TPR_4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 899 PF17874: TPR_MalT" amino acids 452 to 792 (341 residues), 102.3 bits, see alignment E=3.3e-33 PF00196: GerE" amino acids 837 to 892 (56 residues), 55.7 bits, see alignment 3.2e-19

Best Hits

Predicted SEED Role

"Regulatory protein, LuxR:Tetratricopeptide TPR_4"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (899 amino acids)

>GFF2068 Regulatory protein, LuxR:Tetratricopeptide TPR_4 (Hydrogenophaga sp. GW460-11-11-14-LB1)
LNPLPSPLLATKFSPPAADARQVARDALVDAIVQHPARLVLVRAPAGFGKTTLMTQARQR
LMADGVATAWLTLDSADNDPSRFLAYLAGALDELSPQEGGHDPAGTATVPIGEVALALME
RTASLPFPFAFFIDEFEVVRSPGVMALLAQFLECVPAGSRLVIGSRNVPDLRLARLRASG
QLQEIDVQKLRFSLDETRRFFDTLGTQALGSEDLGILHAKTEGWVAALWLASLALERHQY
RRDFIAAFSGTEDSLAEYLAEEVLAQQPPDVRQLLLSTSILREFSAPLCAALLPGMDSES
ILRQLAGANVFLIPIEGRPGHWRYHSLFSSFLRGQLQRERPEAVPELHRAAARWFMAQER
PVPAVDHYIAAGEAAQAVEVLEREAMPLLMQGRLRLLTRWFDALPPAALKEHPLLQVVYL
WSTCFTRGPQASLALMRNTGLEQSDGPEIKVHVAALQASMLALLDRWEEAHAIGVRSLHL
LPSTSAFANSALVNVTANGAAMLGLFPEARQLLDRARRSQGQAVSAFHRMYSETIEGMID
LHEGRLREARARFHLALQSSQGSSLDTAQGNAWAGLLYAASVYEADDLRQAKRLLQVYLP
LARDVWLSDHVVLGHRLLSRIAFAEGEIDHAFQGLSELEYLGHERQLPRLAAAARLERAR
MLLMQGHHDAAAQELRTAGTPEIWRVVGARRHLGHEWEDPEIGQLRWEAVAGDPRKAAVA
LEASAALAQRGGRVRRTNQLQLLNAVALARAGDEEQAQEVLMQVLQPACTEGLMRLVLDE
GEPVARLVARAQATLDAGQLGPLFADYLQRLRIAFGPLASEEPLPTVPVQLPPMMEALTP
KEIRLLQLLAEGYSNRALTEKLFVSDSTVRTHLRNINGKLGANNRTQAVAMARRLGLIR