Protein Info for GFF2066 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1162 PF02775: TPP_enzyme_C" amino acids 457 to 547 (91 residues), 25.7 bits, see alignment 1.4e-09 PF01558: POR" amino acids 729 to 915 (187 residues), 70.2 bits, see alignment E=3.9e-23 PF20169: DUF6537" amino acids 946 to 1145 (200 residues), 203.6 bits, see alignment E=5.1e-64

Best Hits

Predicted SEED Role

"Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits" in subsystem Aromatic amino acid interconversions with aryl acids

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1162 amino acids)

>GFF2066 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits (Hydrogenophaga sp. GW460-11-11-14-LB1)
MNTQAPPRAEATLDDKYTLEHGQVFMTGIQALVRLPLEQRRRDRAAGLRTAGYISGYQGS
PLAAIDGALRRAKAHLEAEDVLFRPGLNEELAVTAAAGTQYVSMFPGARVDGVFSIWYGK
GPGVDRSVDALRHANWAGTSRLGGMLALAGDDHGAKSSTVACYSDIVFESCGMPVLYPAS
VQEILSYGLHGIAMSRFASLCVGMKLVTDIVESAGTVAVNTGHPAIVEPTDHVFPPDGLA
VRPYEMALIPVEERLYHGRLYAALAYIRANGLNRIVHEAPGATVGVVSAGKSYQDVRKAL
YSLGLDEEKATALGLRILKLGVVWPVEPEIVRHFAQGLDTVVVVEEKRPLIEQQVRSILY
GQEKAPRIIGKVKDGHIYDAQPRWLFPNFGEISAHTVAGLLAELLAHKDPGLPARVARLP
APDPTIAPAIPRTPSFCSGCPHNRSTKLPEGSRALAGIGCHGMQVFLDPQNCKTVAQMGG
EGMHWMGQQPFTSEKHVFANIGDGTYAHSGSLAIRQAVAFNAPITYKLLVNGFVSMTGGQ
AVMGGQSIAQLVAGIQADGVQRIVVVSDQPEKYQKPEDSAGAPVFHRSELETVQKDLREY
VGVSVLIYEQACATERRRLRKQGQWDDPPKRSFINSAVCEGCGDCGKVSTCLSIEPLDTP
LGRKRRINQSSCNKDFTCVEGFCPSFVTVHGGRLRRPEQGTQARQPFEVPEPVLPVLERG
FNVLVAGIGGTGVVTIGQVLAMAAHIDGKACLSLDVMGMAQKYGAVFSHLNFAPDASHLT
APRIGAGEVDTLIGCDLIVASGNEPLAALARERSAVVVCSDVIATSEFARNTDWSADPER
LIDRLRSAAGANAVRTVEGQRLAVELMGDAIATNMLMVGVAWQLGRIPLSRAAIERAIEL
NGVSVDMNRRAFQWGRCIAADAQRVDAPARNGQVVVMHRRPVEPPLDQLVAQRVEWLTDY
QNAALAQRYAALVERVRQADPAPKGKPALAAAVAQGYHRLLAVKDEWEVARLYTRPAFRE
ELAQTFEGDYRLHFHVGAWPFSRQRNAQGQPVKVELGPWLMKAFHVLARLRGLRGTVLDP
FRGGDERRLDRVLLARYEQDVAMLVQHVNEDNYADAVALAALPQRIRGYGHVRAAQAATA
AVERERLLAAIATPREPLRKVG