Protein Info for PS417_10495 in Pseudomonas simiae WCS417

Annotation: lysine transporter LysE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 204 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 37 to 60 (24 residues), see Phobius details amino acids 68 to 88 (21 residues), see Phobius details amino acids 109 to 130 (22 residues), see Phobius details amino acids 143 to 168 (26 residues), see Phobius details amino acids 183 to 202 (20 residues), see Phobius details PF01810: LysE" amino acids 11 to 201 (191 residues), 120.2 bits, see alignment E=4.1e-39

Best Hits

KEGG orthology group: None (inferred from 73% identity to geb:GM18_2037)

Predicted SEED Role

"RhtB family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UG77 at UniProt or InterPro

Protein Sequence (204 amino acids)

>PS417_10495 lysine transporter LysE (Pseudomonas simiae WCS417)
MLSLNFLITCLIVVLIPGTGVIFTVSTGLTAGKRASVFAALGCTAGIIPHLLASVLGLSA
LLHTSALAFDMLKYAGVAYLLYVSYATWRDRSAFAVSETPTLSSARSLMLRGLLMNILNP
KLTIFFLAFLPQFVTPGSTAPALQMLVLSAVFMGMTFAVFVVYGLLANVFRRAVIESPRV
QNWLRRSFAAAFAGLGLNLAFAQR