Protein Info for PS417_10470 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 351 transmembrane" amino acids 15 to 33 (19 residues), see Phobius details amino acids 73 to 96 (24 residues), see Phobius details amino acids 116 to 135 (20 residues), see Phobius details amino acids 145 to 169 (25 residues), see Phobius details amino acids 174 to 192 (19 residues), see Phobius details amino acids 231 to 253 (23 residues), see Phobius details amino acids 265 to 284 (20 residues), see Phobius details amino acids 293 to 315 (23 residues), see Phobius details amino acids 328 to 350 (23 residues), see Phobius details PF03773: ArsP_1" amino acids 69 to 346 (278 residues), 110.9 bits, see alignment E=3.4e-36

Best Hits

KEGG orthology group: K07089, (no description) (inferred from 72% identity to hse:Hsero_3152)

Predicted SEED Role

"FIG006303: protein yraQ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UDN3 at UniProt or InterPro

Protein Sequence (351 amino acids)

>PS417_10470 membrane protein (Pseudomonas simiae WCS417)
MPNVTSSQPNRGWSFWWKPALFLLIACVGLYYVKWSPYYLKAFVAADNHSIGASILNDQQ
SAPLAAALAYAQVYFLAIWKAAVLAVILGSLLQVLIPRDWLLRLFGRAGLGSTLRGGLFA
LPGMMCSCCAAPVAAGMRRQQVSVGAALAFWIANPVLNPATLVFMGFVLGWGFTALRLVA
GIVLVVGVSLVAQRISRPDQVPEPALEAMAEVSVVESQPFLSRWLRTLWQLFWSTIPVYI
LAVLILGAARVWLFPHVDGAMTNSLVWLVPLAIVGTLFVIPTAAEIPIVQTMMALGMGTG
PAVALLMTLPSVSLPSLLMLRKDFDARVLATVAGLTMLVGVVCGLIGAVLL