Protein Info for GFF2049 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1015 TIGR02786: double-strand break repair protein AddB" amino acids 3 to 1007 (1005 residues), 1056.3 bits, see alignment E=0 PF12705: PDDEXK_1" amino acids 742 to 989 (248 residues), 88.1 bits, see alignment E=4.7e-29

Best Hits

KEGG orthology group: None (inferred from 81% identity to xau:Xaut_3299)

Predicted SEED Role

"FIG041266: ATP-dependent nuclease subunit B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1015 amino acids)

>GFF2049 hypothetical protein (Xanthobacter sp. DMC5)
VPRVLTIPPSAPFLPVLARALLDGALVEGFAPRNDPLALAGATVFLPTRRAGRLFAEALL
EASGGTALLLPRIVPLGDVDEDALAFSEDAPVLAAPHAIAPVHRRLVLARLVAHWRDTLS
KAVEREAVAAGTASTFALADALGSLFDDLTTAGLGVERMDGLVPDELDRYFKVGLDFVRI
ARRAFSAYLAEEGLVEPAARRDALVDAEARRLTALGTAAGPVIAAGSTGSMPATARLLKA
IASLPHGAVVLPGLDLDLDAPSFDRLADPVLGAPDHPQYGLARLLGTLGVERGEVIPLAP
PAPFGRERLMSEALRQAETTDLWATLPERLPPEGLAAAMAGISVVEADDPRAEALAIALL
LRDSLERPGETAALVTPDRDLARRVAAEMARFGVALDDSAGTPLADAPAGRLAGLLVTAA
AEGLAPVPLFALLTHPLARFGLDGQVKADAVGALELAALRGPRPAAGIAGLRAALDAHDP
EGYRRSDPRSRIDGKAVAAARDLVQRLEAALGPLLALGDRYGSVPLDELVAAHRAAVEAA
AGRLDPEAEDAAEAALARTFETLGRVAGDGPALDLSSYADAAGALFSDTMVRPRAEPHAR
IRILGPLEARLVHVDRMVLGGLVEGSWPTIPETDPWLSRPMRAQLGLDLPERRIGLSAHD
FAQGFGARELVLSFAAKVGGTQSVPSRFVQRLKTVAGEAEWNAARARGTRFVRAARSLDE
APAVPRATRPAPAPPLELRPRRLSVTEIETFLRDPYSIYARHVLGLSPLDDLDAPPGGAE
RGSALHEAVGRFTQAFPDELPPDALARLIEEGARAFAPLKAFPAEHALWWARFERAAGFL
VAFERERRLHLDRIVAETKGSLDIPLAASTFRLTGRADRIEIKRDGTLAIIDYKTGTAPS
AKQAASLSPQLPLEAAMARRGGFEGVPGAPVEELTYVELKGGADGGAEKPVKVKDRSTHD
LAEDALAGLESLLKAFENVAQGYRSLAAPQWSGRYGDYDHLARVREWALAGEEGE