Protein Info for PS417_10440 in Pseudomonas simiae WCS417

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 385 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 41 to 63 (23 residues), see Phobius details amino acids 70 to 93 (24 residues), see Phobius details amino acids 99 to 120 (22 residues), see Phobius details amino acids 132 to 151 (20 residues), see Phobius details amino acids 157 to 180 (24 residues), see Phobius details amino acids 201 to 223 (23 residues), see Phobius details amino acids 235 to 253 (19 residues), see Phobius details amino acids 265 to 285 (21 residues), see Phobius details amino acids 291 to 310 (20 residues), see Phobius details amino acids 322 to 344 (23 residues), see Phobius details amino acids 354 to 375 (22 residues), see Phobius details PF07690: MFS_1" amino acids 9 to 328 (320 residues), 142.5 bits, see alignment E=8.1e-46 amino acids 232 to 382 (151 residues), 39.5 bits, see alignment E=1.7e-14

Best Hits

KEGG orthology group: None (inferred from 98% identity to pfs:PFLU2140)

Predicted SEED Role

"Major facilitator family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U2A9 at UniProt or InterPro

Protein Sequence (385 amino acids)

>PS417_10440 MFS transporter (Pseudomonas simiae WCS417)
MLFPILLLSAAGFTVLTTEFVIVGLLPSIARDLNVSVSQAGLLVTLFAFTVAAFGPFLTA
YCARFPRKRLFISILILFGVANTVAALAPNIWVMALARLIPALGLPVFWALASETAVDIV
GPEFAGRAIEKIGFGIVCATVFGIPVGTLIADMFGWRAAFAILAVVALAKALLLFIYLPV
TQPKNDEVTLRSQFKILRNPLMQGHILLSILVFSGMFTAYTYLADILERLAGFDGTLVGW
CLMGFGAVGLIGNSLGGRAVDRHPLIASMVFCGFMIAGMVALVPAIHSTIGLAAAMAVWG
VTQAAMFLVSHVRLMKAAPHAPAFAASLNIAGANLGIGLGAMVGGHVIDTLGLGSLGFAA
SGFILVSILLALWLMTAKQPVASQA