Protein Info for GFF2032 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 264 transmembrane" amino acids 7 to 31 (25 residues), see Phobius details amino acids 65 to 88 (24 residues), see Phobius details amino acids 100 to 122 (23 residues), see Phobius details amino acids 131 to 153 (23 residues), see Phobius details amino acids 174 to 198 (25 residues), see Phobius details amino acids 231 to 252 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 77 to 252 (176 residues), 50.4 bits, see alignment E=1.1e-17

Best Hits

KEGG orthology group: K02053, putative spermidine/putrescine transport system permease protein (inferred from 79% identity to ara:Arad_7049)

Predicted SEED Role

"Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1)" in subsystem Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (264 amino acids)

>GFF2032 hypothetical protein (Xanthobacter sp. DMC5)
MSLSRILLRVAVGLILVWLMVPVLIIVPMSFSGARFLAFPPPSWSLRWYEAYLESAAWMQ
ATRVSLILAVSSAIIATVLGTAAAYALNLSTSRLVRSLQVVLLLPLVVPIVITAVGVFLV
YANVGLLATMSGLILANVMLGLPFVIISVLTGLRKFDPAQEMVSRSLGMNRLRTFFIVTL
PQIRPSVISGLLFAFISALDETVVAIFISGGEYQTLTKRMFTALRDEIDPTIAAISTLLT
AISFLMVILVSLSARTAPRKNADA