Protein Info for PS417_10360 in Pseudomonas simiae WCS417

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 signal peptide" amino acids 9 to 11 (3 residues), see Phobius details transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 44 to 65 (22 residues), see Phobius details amino acids 77 to 94 (18 residues), see Phobius details amino acids 100 to 121 (22 residues), see Phobius details amino acids 132 to 155 (24 residues), see Phobius details amino acids 165 to 184 (20 residues), see Phobius details amino acids 212 to 233 (22 residues), see Phobius details amino acids 245 to 268 (24 residues), see Phobius details amino acids 277 to 297 (21 residues), see Phobius details amino acids 303 to 323 (21 residues), see Phobius details amino acids 334 to 355 (22 residues), see Phobius details amino acids 365 to 386 (22 residues), see Phobius details PF07690: MFS_1" amino acids 27 to 352 (326 residues), 88.1 bits, see alignment E=2.8e-29

Best Hits

KEGG orthology group: None (inferred from 66% identity to pfo:Pfl01_2258)

Predicted SEED Role

"putative MFS transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See U1TH30 at UniProt or InterPro

Protein Sequence (404 amino acids)

>PS417_10360 MFS transporter (Pseudomonas simiae WCS417)
MTSSDKHSLAAVIGLLVLSIALRPAIVSIGPILLLIQNHYGLSFTQAALLTSIPDVCMGV
LALLAPGLSRRFGSHRCMIAALLLIGVACLLRAVSPNAAFLLLTTFVISVGIAIAGALMG
GWIKTHFAHRPAFFMGIYAAGLSVGATLSALFTAPITELTHSWRVGAGLWSLLSVTAVIS
WVWMARRFTAGAPRLAPPPAQSIRLPWRTPQAWLVALYFGASQFVVYALFSWLAPASTET
AVTHLSAGTLLGLFTAVFAVASVGAGLIRGKAHDRRGLLAACTLIALLGTAGMAFAPMAW
PTLYVLLVAIGLGMSFTVGMTLPLDNASSPAQAGAWTVFMLFIGYLVAALGPLCFGTLRD
HTGNYSLAYDMLFAVLVFMLCLTPVLKPARTDAPAPQAAEAVRT