Protein Info for PS417_10355 in Pseudomonas simiae WCS417

Annotation: transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 956 PF00486: Trans_reg_C" amino acids 35 to 109 (75 residues), 54.1 bits, see alignment 1.3e-18

Best Hits

KEGG orthology group: None (inferred from 81% identity to pfo:Pfl01_5714)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See U1URR4 at UniProt or InterPro

Protein Sequence (956 amino acids)

>PS417_10355 transcriptional regulator (Pseudomonas simiae WCS417)
MESAPDALHDAASLDFAFGPFRVVPGKRLLTKDGTALDIGGRAFDLLIALLERPGRVVSK
RELINLVWPDIIVEEGSLRFHMTGLRRILGDGEDGARYINTQVGVGYAFVAPIERAARPL
PAPHSLHRGANGVGRLPPRPSLIGRNADVALVMERLRQPKLFTIVGPGGVGKTSLAVETG
HCRAEDDAVHFVDLAQVEGADLVPIALASSLGIAVQAEEPMQVLLAHLRSQRLLLILDNC
EHLIDAVCAIVEQIQDAAPGVTLLATSREPLRARGEHVYRLNPLAFPSELQDLSVEQLLG
FPAVQLFVERVCSSNAALALAPGDARLIADMCQRLEGMALPIELAAVRVAVHGVHATHAL
LGERFSLGWAGRRTALPRHQTLRAMLDWSYDLLSANERLVFDRLAVFVGPFSLEAASHIA
ADDWIDPISVAATLDELAAKGLVTVNRSSATASYRLLEMTRAYAREKLQVRGPSEVHALA
FRHAAHHMEQLKHLGETPHAIFASSARLGCQLGNIRSALEWSFGPQGDPGLALPLAAASA
QLFLHFSLLVECRTWCTRATELLELGYFGTPTEMELQAALGLVLMFTKGNSAAAEKALLR
ALDIAVSLGEHRSQLRLLGRLQIFYERIGDFKASLVWAERAVEIGAVIGKPDAIAVAASL
AGICYHLLGNQPLARQTLEHSLRNSLPSQRSLTIHYGFDHRNRTGLALARTLWLMGFPDQ
ARHGARQVETEAAALDHATTYCIALVWTLQIYIWTGDLDTAAERLHTFKSIAEANAFGPY
IAAATGFGAAVAIRAGRPGNAVAVLEETLARLHGMRYELLTTSFEMALAEGLILAGQFEQ
ALAQVEATIEHCRRSGDAFPLPELLRIQASIHKAQVPGDNKRPEALLQASLSLSQQQGSR
SWALRSAIDLAALWQAQGRDSEAQYLLGQHREQFSEGFDTHDLRLLQARLDDAQHA