Protein Info for PS417_10225 in Pseudomonas simiae WCS417

Annotation: chitinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 177 PF00182: Glyco_hydro_19" amino acids 42 to 137 (96 residues), 42.4 bits, see alignment E=3.7e-15

Best Hits

KEGG orthology group: K03791, putative chitinase (inferred from 83% identity to pfs:PFLU4131)

Predicted SEED Role

"FIG101079: Lytic enzyme"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UJB0 at UniProt or InterPro

Protein Sequence (177 amino acids)

>PS417_10225 chitinase (Pseudomonas simiae WCS417)
MPINEQQLLQILPNAGHQAGVFVPALNTAMNRYGIVGTARAAAFIAQVGHESGQLRYVRE
IWGPTAQQLTYEGRADLGNTVKGDGSKYRGRGLIQITGRANYAACGEALGLDLINRPELL
ELPQHAAMSAAWFWSTKGLNTLADQGEFTKITRRINGGLNGLEDRLQLWERAKKVLA