Protein Info for GFF1986 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1297 transmembrane" amino acids 137 to 155 (19 residues), see Phobius details amino acids 218 to 243 (26 residues), see Phobius details amino acids 247 to 267 (21 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1297 amino acids)

>GFF1986 hypothetical protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
MIAGLGQAGDSKITWDGVRGGLASHRQELEDCHVYLNAVSGLQALAALKTHQASDRALVE
QARARFEELVQTHVATFQRCLEPGYLVPRCMIAGVRDVGLGGLSLLKTIPTAAVNGMATG
GPLTGAAKDLATTLPHLSSALTMLTGVFHIAHAILEGLDARRNLKALLKAEQFDKNVFEA
HGAGCPELLELLEHRHQWRELARLDADLLDLHGWIRGIYGGTSLGGAVAGAVLTGLGGAA
VFGAAGVGIPGLVGIFLAGAYMMWYGIRANIRTAKQKCHEKACRTIAALHERSADKMPGL
SSPHLSRPIQAIARDIVGRLQTQDTQQQTRQMLIALGLAPSAVDAAIDGDSKPIIPLIEQ
LGSQATLSSESEGLRRFHACPDKPASKQLTVLERWMDLGHKPADITAPCDLAQASWTQYL
APGADMGDLRKSSLTPQLIRHHWNDAGFQPALRRQLCTKGFHVMKTPDDAWALLDIHRTD
MHREAKVRAEVAGWINAGQWHHVKRCLRDDLATLAHRKVLQEDYGILPRHAGNILAVLQQ
RAATLPLQTDTLPSFMAIYKASDATGKRLLLPQVQALVDASAQSMPKDEGVALRTALGIT
ADSGIHEGNVDAVLQSLQKFLAVSEKLRGQTLSKVVASLHTYPTDSHFPKALCHLAAMRE
LRMRCETKGCDLGRPDVEHALKQAKALSTQKLHTRTIGAGEGGGVFGFGGYRLNKQGAFI
RSLFEQCMSSKPGTSPKQEESSMSSKPGTSPKQEENIQAVQQQSALFLSDHFSTLMVACK
ACKPVNKGTFLPQVRALVDTATQGMPEDERAALRAALGIPDENDIDEGNVDAVLQALQKF
LIVSEKLPAQTLSKVVASLHTYPTDPSIPEALCRLAALRELRQRCEAKGRSLAEPEVLHA
LVLAKALSTEKLHGNGFLGLGRPRLNEKGAFLHHLFESCLGGHPPKVALSSTSLQQLWCQ
SDNSAYRAALMQSANQMMGREPTAPVAPDAQAFADLFAQYSTPGALQKALRSKDDKQRGA
ASARLDEMLTAAETHVKDSLGGEDCIVHLKAYFRLEKLKHGSNPPSHALGVISADRLDTY
RTALAWRKGRMPAWLRKIVPAWLVAWFMKARNKNIQAIQAELKQLSNGQKAQVHSFWSAK
FLTQHNASTTELQKLQALYPGLEAAKSYKELVTRLQTLSRMSVPQLRESLLQNQERAWHW
IQVEFKTRGLLPPTDKPQALDMLREAAKKGGADLLVALSTLKSNASRLQGEKLAQRLWRE
ADHRTTAEEDKGDSPGLTRSNSALIPGKRPSLSMVNE