Protein Info for GFF1979 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: FIG00638309: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 729 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 41 to 61 (21 residues), see Phobius details amino acids 83 to 105 (23 residues), see Phobius details amino acids 124 to 149 (26 residues), see Phobius details amino acids 160 to 187 (28 residues), see Phobius details amino acids 214 to 232 (19 residues), see Phobius details amino acids 238 to 255 (18 residues), see Phobius details amino acids 261 to 277 (17 residues), see Phobius details amino acids 289 to 309 (21 residues), see Phobius details PF05231: MASE1" amino acids 15 to 315 (301 residues), 237.7 bits, see alignment E=1.7e-74 PF00563: EAL" amino acids 493 to 724 (232 residues), 198.1 bits, see alignment E=1.5e-62

Best Hits

Swiss-Prot: 69% identical to PDEA_ECOLI: Probable cyclic di-GMP phosphodiesterase PdeA (pdeA) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to seh:SeHA_C2668)

Predicted SEED Role

"FIG00638309: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (729 amino acids)

>GFF1979 FIG00638309: hypothetical protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MPDKCNVLKNIKIFLLAFCLTVPAILLSRLISPRATIDSSYIFLAWLPLCVMFSVLFLFG
RRGVAPMVGGMMLTNEWNFHLPLPQAMVLLFCQTFPVLLVCAIVRWQLGARWRYGIPNQG
IWLRVFWLGLMTPFGIKISMHLAGHYLAFPVTISTFFGTGTAIFSIVDLLSLISAALIFT
LFFYYPLRMIVSPHYMRIFWRRDVAPYLAKEKRLFTLLWFATLATLLAVLCTPFETKYIA
GYLVPVLFIGFTIGVGKISYPLLNFSWALTALFLLSYNRNFLQGVGSEYSLAFILSVLIS
FSICLLYMARINQRSEWLNRQWHSQALTDPLTQLPNLRALEQFLLQDAGQSVCYLRMENL
EFLSRHYGMQMRVHCEREVFRMLQPLLLEKEKIFHLPGSELLLVLTGPETEARLQYMLNV
LNNRKIYWNNTGLDMEYGASWGTFDGRQETLQPLLGQLSWLAEQSCSHRRVLALTQSIEA
ASGQTTERVLRLQKIRQALERGALVLYAQPIRDAQGKGYDEILTRLRCDDGIMMPNQFIP
LIAQFNLSIRFDMQVMEALLQWLSAHPSAEQGARFSVNLMPLTLLQKETASRIMQLFKRY
GVPPASVIIEITEEQAFSHSEISMHNINQLRKFGLKIAIDDFGTGYANYERLKRLKADII
KIDGCFVKDILTDSLDAMIVKSITDLAKAKSLSVVAEFVETPAQRDLLLQLGVHSLQGYL
IGRPRPLGK