Protein Info for GFF1962 in Hydrogenophaga sp. GW460-11-11-14-LB1
Annotation: Threonine dehydratase (EC 4.3.1.19)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K01754, threonine dehydratase [EC: 4.3.1.19] (inferred from 80% identity to aav:Aave_0142)Predicted SEED Role
"Threonine dehydratase (EC 4.3.1.19)" in subsystem Branched-Chain Amino Acid Biosynthesis or Threonine degradation (EC 4.3.1.19)
MetaCyc Pathways
- superpathway of branched chain amino acid biosynthesis (17/17 steps found)
- superpathway of L-isoleucine biosynthesis I (13/13 steps found)
- L-isoleucine biosynthesis I (from threonine) (7/7 steps found)
- L-threonine degradation I (5/6 steps found)
- superpathway of L-threonine metabolism (13/18 steps found)
- L-methionine degradation II (2/3 steps found)
- L-threonine degradation V (1/2 steps found)
- hypoglycin biosynthesis (4/14 steps found)
- cyclosporin A biosynthesis (2/15 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 4.3.1.19
Use Curated BLAST to search for 4.3.1.19
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (399 amino acids)
>GFF1962 Threonine dehydratase (EC 4.3.1.19) (Hydrogenophaga sp. GW460-11-11-14-LB1) MLQLQDIQTAAGRLAGQVLDTPFVESRTISQLTGCQVFLKFENLQYTASFKERGACNKLA QLTPEERLRGVVAMSAGNHAQGVAYHAHRLGLRAVIVMPRFTPGVKVERTRGFGAEVVLH GDTLDAARSHARELAQQQGLVFVHPYDDEAIVAGQGTVALEMLRDQPDLDTLVIAIGGGG LIAGIATAAKAIRPDIEIVGVQTERFPAMVNAIKGTHLPQGTSTIAEGIAVGTPGVVTEA IIRRRVDDLLLVDEGDVEQAIVMLLEIEKTLVEGAGAAGLAALIKHPQRFAGKRVGLVLS GGNIDPMLLASIIERGMVRAGRLARIQVNARDVPGNLARITATVAEAGANIDEVHHQRAF TLLAAQNVAIELVLQTRGREHIEQVIERLREAGFDTTLL