Protein Info for GFF1956 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Inner membrane protein YqiK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 575 transmembrane" amino acids 6 to 29 (24 residues), see Phobius details PF01145: Band_7" amino acids 44 to 185 (142 residues), 65.8 bits, see alignment E=5.2e-22 PF15975: Flot" amino acids 414 to 540 (127 residues), 131.5 bits, see alignment E=1.9e-42

Best Hits

KEGG orthology group: None (inferred from 84% identity to pna:Pnap_3022)

Predicted SEED Role

"Inner membrane protein YqiK"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (575 amino acids)

>GFF1956 Inner membrane protein YqiK (Hydrogenophaga sp. GW460-11-11-14-LB1)
MIDLLFNIGVPAAIGFVALVFIGIIFARLYRRATKETAFVRTGLGGQKVIMDGGAIVLPI
FHEIIPVNMNTLKLEVSRREEQSLIALDRMRVDVAAAFFVRVKQVAESVSTAAQTLGRKT
MAPNELKVLVEDKFVDALRATAATMTMQELQDKRREFVQAVQNAVAEDLEKNGLELESVS
LTSMDQTAKDFFNPNNAFDAEGLTKLTQETETRRKQRNDIEQDTEVQVRTKNLEAERLKL
DITKQQEFATLTQQQEISNAKADQVAEIAKIEAERQREAEEVRINAERLVKERRIEADRT
VNSAEIDKNLTIQKKTIEADRETRVKQAEQRQAVELANQGAAIAIARKSEEQSQADAAAN
QARAEAVKAEEGVNTAREVAIAERGKSIQLIDAAREAEQLAISVKVAAEAEKEAAENRAM
ALKVEADAKREAALAEAEGISAINDAKNRLGAAQIDLAVRMQLIQSLPLIIREASKPLEK
IDSIRLFQVNGLPMGGLNGTDDGSARGGSSGSLPEQVMNSALQYQVAKPIVDAIMKDAGL
ANPSLTGISQSVAAMVNGSGALSEPPSPASLPNPA