Protein Info for GFF1951 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Integral membrane protein TerC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 315 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 41 to 62 (22 residues), see Phobius details amino acids 90 to 108 (19 residues), see Phobius details amino acids 116 to 137 (22 residues), see Phobius details amino acids 143 to 162 (20 residues), see Phobius details amino acids 206 to 230 (25 residues), see Phobius details amino acids 236 to 256 (21 residues), see Phobius details amino acids 265 to 283 (19 residues), see Phobius details amino acids 289 to 310 (22 residues), see Phobius details TIGR03718: integral membrane protein, TerC family" amino acids 6 to 312 (307 residues), 397.6 bits, see alignment E=2e-123 PF03741: TerC" amino acids 81 to 283 (203 residues), 174.6 bits, see alignment E=9e-56

Best Hits

Swiss-Prot: 57% identical to ALX_SALTY: Putative membrane-bound redox modulator Alx (alx) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K05794, tellurite resistance protein TerC (inferred from 64% identity to aex:Astex_1639)

Predicted SEED Role

"Integral membrane protein TerC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (315 amino acids)

>GFF1951 Integral membrane protein TerC (Hydrogenophaga sp. GW460-11-11-14-LB1)
MESIAPLWLWVVFVVFVVAALFVDFVVLKKQGSHAVGVKEALNWSFAWVALSLLFNGLFW
WAVKDATGSSAIATEKSLEFLTGYLIEKSLAVDNIFVFLLIFSYFAVPAAFQKRVLMIGI
LGAIVLRTVMILVGGWLLAQFHWILYVFGAFLVLTGVKMWWAAGQEPSLDENPALKLLRR
VLPVSKGFDGEKFFTVENGKRIATPLLMVICLVGFTDVIFAVDSIPAIFAVTRDPFIVLT
SNVFAILGLRAMFFLLQAAASRFHLLNYGLALILVFIGTKMLLIDIYKIPVAMALGVVLS
ILAITMLWSARTAKT