Protein Info for GFF1943 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Putative inner membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 203 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 31 to 48 (18 residues), see Phobius details amino acids 60 to 81 (22 residues), see Phobius details amino acids 101 to 122 (22 residues), see Phobius details amino acids 130 to 148 (19 residues), see Phobius details amino acids 154 to 172 (19 residues), see Phobius details amino acids 179 to 201 (23 residues), see Phobius details PF02517: Rce1-like" amino acids 100 to 191 (92 residues), 70.1 bits, see alignment E=7.7e-24

Best Hits

KEGG orthology group: K07052, (no description) (inferred from 97% identity to sec:SC2379)

Predicted SEED Role

"Putative inner membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (203 amino acids)

>GFF1943 Putative inner membrane protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
VAVLFGLFGIFVFASFSPSYAWLYLGGLAAPFIYSIVFVYAIAAWSIYSKYYPFLSLGRL
SFVECFVPALALVCLTVLYNAFSGPEPWMAELSRQFFLHKFLNTLAMCFLAPVAEEIIFR
GFLLNSSIGWGRYSRASGIIITSLAFAFMHTQYLFAVTFVYLFVFSSILCVVRMRSRGLM
IPIILHILNNAWVVFGLLFSATE