Protein Info for GFF1938 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Transporter, putative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 392 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 48 to 70 (23 residues), see Phobius details amino acids 85 to 106 (22 residues), see Phobius details amino acids 113 to 139 (27 residues), see Phobius details amino acids 151 to 171 (21 residues), see Phobius details amino acids 177 to 196 (20 residues), see Phobius details amino acids 218 to 244 (27 residues), see Phobius details amino acids 250 to 269 (20 residues), see Phobius details amino acids 279 to 298 (20 residues), see Phobius details amino acids 304 to 327 (24 residues), see Phobius details amino acids 340 to 359 (20 residues), see Phobius details amino acids 368 to 389 (22 residues), see Phobius details PF07690: MFS_1" amino acids 20 to 249 (230 residues), 68 bits, see alignment E=3.7e-23 amino acids 223 to 389 (167 residues), 63.2 bits, see alignment E=1.1e-21

Best Hits

Swiss-Prot: 100% identical to YFCJ_SALTY: Uncharacterized MFS-type transporter YfcJ (yfcJ) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: None (inferred from 99% identity to set:SEN2354)

Predicted SEED Role

"Transporter, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (392 amino acids)

>GFF1938 Transporter, putative (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MTAVSQKTTTPSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHELGYSNTMVGIAVGIQ
FFATVLTRGYAGRLADQYGAKRSALQGMLACGLAGAAWLLAALLPVSAPVKFALLIVGRL
ILGFGESQLLTGTLTWGLGLVGPTRSGKVMSWNGMAIYGALAAGAPLGLLIHSHFGFAAL
AGTTMVLPLLAWAFNGTVRKVPAYTGERPSLWSVVGLIWKPGLGLALQGVGFAVIGTFIS
LYFVSNGWTMAGFTLTAFGGAFVLMRILFGWMPDRFGGVKVAVVSLLVETAGLLLLWLAP
TAWIALVGAALTGAGCSLIFPALGVEVVKRVPAQVRGTALGGYAAFQDISYGVTGPLAGM
LATSYGYPSVFLAGAISAVVGILVTILSFRRG