Protein Info for GFF1935 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 263 transmembrane" amino acids 36 to 55 (20 residues), see Phobius details amino acids 96 to 118 (23 residues), see Phobius details amino acids 125 to 145 (21 residues), see Phobius details amino acids 166 to 184 (19 residues), see Phobius details amino acids 195 to 215 (21 residues), see Phobius details amino acids 225 to 244 (20 residues), see Phobius details PF01569: PAP2" amino acids 125 to 243 (119 residues), 94.4 bits, see alignment E=2.5e-31

Best Hits

KEGG orthology group: None (inferred from 80% identity to xau:Xaut_2555)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (263 amino acids)

>GFF1935 hypothetical protein (Xanthobacter sp. DMC5)
VSDTPPLSLLKRGLHRLEGLPIVGPLLASVSTMERATLVVVGFIAFAFYLFLVVADEVTE
GPPGSLDRGILLALRNPADPSDPLGPPWVEEMMRDLTALGGTSVLTLLTLAVIFFLILTR
KRHAALLVAVSVAGGTILSQGLKWGFDRPRPDLVPHGMSVYSQSFPSGHAMLAAVVYLTL
AALLARTQKRTRVKLFLLGGAAAITVIVGISRIYLGVHWPTDVVGGWALGAAWASTCWLA
MLWLQRRGEVEGEANGSGASPRD