Protein Info for GFF1924 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Putative amino acid transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 473 transmembrane" amino acids 7 to 26 (20 residues), see Phobius details amino acids 37 to 60 (24 residues), see Phobius details amino acids 82 to 102 (21 residues), see Phobius details amino acids 122 to 140 (19 residues), see Phobius details amino acids 152 to 173 (22 residues), see Phobius details amino acids 198 to 219 (22 residues), see Phobius details amino acids 232 to 251 (20 residues), see Phobius details amino acids 281 to 305 (25 residues), see Phobius details amino acids 333 to 353 (21 residues), see Phobius details amino acids 359 to 383 (25 residues), see Phobius details amino acids 404 to 426 (23 residues), see Phobius details amino acids 438 to 457 (20 residues), see Phobius details PF13520: AA_permease_2" amino acids 14 to 446 (433 residues), 221.7 bits, see alignment E=1.7e-69 PF00324: AA_permease" amino acids 35 to 466 (432 residues), 92.7 bits, see alignment E=2.2e-30

Best Hits

KEGG orthology group: None (inferred from 99% identity to ses:SARI_00540)

Predicted SEED Role

"Putative amino acid transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (473 amino acids)

>GFF1924 Putative amino acid transporter (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MSNTNSGLLGIKDIVFMNVIAILSLRQIPNVAPYGASAMLLWVIAAFCLFFPLAMVCGEL
STGWPKDGGIFVWIKEAFGKRIAWIVVVCFLFSCVLFFPLMLQFGFTALGYMIGGGLAEN
KAFIGIGSAVIFWLLTLMNIRGMEWTKIINSISAWCGVFIPSAILILLAVVWLCTGHQMQ
TDYTTAKNWIPDLGHWDTIVFLSSMMFAFAGLEVAPMIAGRTRNPQRDFPRAMAVSAAVI
VGIYMVGTWALNTLLPAGKTDIVAGVMQAMHAAADTLHMPWLIPVMAICMFFGALGQINS
WLVGPIYMLQEASREDNLLGDRIGKLHPVWKTPAFALTVQAIIVTVLCFSTFISPSVAAA
YWMLTALTTITYFIPYLVMFPAFWRLRKTQPDTPRSFKIPGKVLPAILPALGFLSIAFAV
ALLFIPPSQIDMGGYFQYAGKIIGGAVLAVVVAEYIYHRAQKRNARLSMAGGK