Protein Info for GFF1908 in Pseudomonas sp. DMC3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 274 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF00106: adh_short" amino acids 3 to 186 (184 residues), 162.1 bits, see alignment E=3e-51 PF08659: KR" amino acids 4 to 158 (155 residues), 33.6 bits, see alignment E=9.6e-12 PF01370: Epimerase" amino acids 4 to 82 (79 residues), 28.4 bits, see alignment E=2.7e-10 PF13561: adh_short_C2" amino acids 10 to 202 (193 residues), 128.3 bits, see alignment E=9.2e-41 PF08643: DUF1776" amino acids 75 to 261 (187 residues), 34.9 bits, see alignment E=2.9e-12

Best Hits

KEGG orthology group: None (inferred from 94% identity to pfo:Pfl01_0945)

Predicted SEED Role

"Oxidoreductase, short chain dehydrogenase/reductase family" in subsystem Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (274 amino acids)

>GFF1908 hypothetical protein (Pseudomonas sp. DMC3)
MPVALITGCSSGIGRALADAFKAAGYEVWASARKTEDVAALSAAGFTAIQLDVNDGAALE
QLAERLNQQHGGLDVLINNAGYGAMGPLLDGGVQAMQRQFETNVFSIVGVTRALFPLLRR
ARGLVVNIGSVSGVLVTPFAGAYCASKAAVHALSDALRMELAPFGIRVMEVQPGAIESSF
AKNAGHEAEQLISEQSPWFPLREGIRARAKASQDKPTPAAEFAAELLKAVRQSKPPRLVR
IGNGSRALPLLAALLPKGLLESTLMKRFGLHLKF