Protein Info for GFF1907 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: membrane protein, putative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 373 transmembrane" amino acids 7 to 26 (20 residues), see Phobius details amino acids 32 to 50 (19 residues), see Phobius details amino acids 61 to 83 (23 residues), see Phobius details amino acids 157 to 175 (19 residues), see Phobius details amino acids 214 to 232 (19 residues), see Phobius details amino acids 238 to 260 (23 residues), see Phobius details amino acids 264 to 267 (4 residues), see Phobius details amino acids 272 to 289 (18 residues), see Phobius details amino acids 309 to 339 (31 residues), see Phobius details PF01594: AI-2E_transport" amino acids 13 to 339 (327 residues), 177.7 bits, see alignment E=1.8e-56

Best Hits

KEGG orthology group: None (inferred from 61% identity to rfr:Rfer_0020)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (373 amino acids)

>GFF1907 membrane protein, putative (Hydrogenophaga sp. GW460-11-11-14-LB1)
MAPVSGSLMLRVLLGLVTVAFIWILLPFYGTILWGSIIALLFVPLNRWLLPRLGQRRNIA
ALTTMLAALVIVVLPTVLVVASLAREATQLYARIESGELKPALWLRSVFEALPDWLTDLL
ARVGLGNVDLIQRKLTQALTQGSQFIATQTFNLGQDMLGLLISLGIALYLAFFLVRDGGS
IVRSIRLAIPLPPDDKQELLEQFGTVLRATVKGNLVVALVQGALGGLAFWVLGVNAALLW
AVLMALLSLLPAVGAGLVWGPVAIWLFATGEVWPAVGLTLYGVFVIGLVDNVLRPLLVGK
DTGMPDYLVLISTIGGIAVMGINGFVIGPVIAAMFVAVWDIQTATRVRARAASLAADTPP
PAAPPIDKGSEPH