Protein Info for GFF1903 in Methylophilus sp. DMC18

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 216 PF13487: HD_5" amino acids 29 to 197 (169 residues), 119.6 bits, see alignment E=1.3e-38 PF01966: HD" amino acids 45 to 166 (122 residues), 71.6 bits, see alignment E=6.9e-24

Best Hits

KEGG orthology group: None (inferred from 50% identity to rfr:Rfer_2293)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (216 amino acids)

>GFF1903 hypothetical protein (Methylophilus sp. DMC18)
MLNRINQLKLGDAMSEAVSNHSGVLHLGKVFADALRMRDAYTRLHSDRVMALSHGIGLDI
GLSRHELDALELGACLHDIGKIVVPDAVLMKPSKLNAEEFAIMQTHPSVGANLIEVYEHK
DAQRIADIVRYHHEWFDGSGYPGHLVGEAIPLLSRIVTVVDNYDAMAVRRVYQEARPHDE
ILRIMESESGSKLDPELFQRFVKVIHDPRYAEFKAS