Protein Info for GFF1899 in Variovorax sp. SCN45

Annotation: Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1180 transmembrane" amino acids 742 to 764 (23 residues), see Phobius details PF02775: TPP_enzyme_C" amino acids 468 to 552 (85 residues), 27 bits, see alignment 5.5e-10 PF01558: POR" amino acids 748 to 934 (187 residues), 76.6 bits, see alignment E=4.2e-25 PF20169: DUF6537" amino acids 962 to 1159 (198 residues), 222.9 bits, see alignment E=5.9e-70

Best Hits

Predicted SEED Role

"Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits" in subsystem Aromatic amino acid interconversions with aryl acids

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1180 amino acids)

>GFF1899 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits (Variovorax sp. SCN45)
MASHELASVALDDKYTATEGRIYLSGIQALVRLMLVQKWRDQKAGLNTAGFVSGYRGSPL
GGLDEALWKAQPQLEANAVKFLPGVNEELAATAVWGTQQVHLTGEAAVDGVFAMWYGKAP
GVDRCGDVFKHMSHAGTSPNGGILLVAGDDHGASSSTLPNQSDHLFAASMIPMLYPQSVE
EYIELGLHGFAMSRFAGLPVGFKALADTVESSGSIPAGALDVHTRLPSDFVFPPGGVHAR
LSTDTLGVQARKQEALMQDYKIYAAIAYARENRLNRVTIDSPKARLGIVASGKSYRDVLE
ALEELGIDADEAARIGIRLFKVSMPWPLEPDSIREFADGLEEILVVEEKRQIVEYQLKEH
LYNWREDVRPRVIGKFDEQGEWGAHPRGKWLLPATADFSVAQIARVVAARVARFHTSDRI
RMRLAILDAKDVVLGKAVATPSRPAWYCSGCPHNTSTKVPEGSLALAGIGCHVMATAIYP
EHNKTTTHMGGEGAPWLGQAWFSKRRHVFANLGDGTYYHSGSLAIRAAVAAGVNITYKIL
YNDAVAMTGGQPVDGPITVPRIAHQMAAEGVKRLALVAEDPTRWADRSVLPPERDGFVLT
VHHRDQMDTVQRELREFKGVSVLIYDQVCAAEKRRRRKKGEFPPAARRVFINDAVCEGCG
DCGEQSNCTALLPKQTELGLKRSVDQSACNADESCIKGFCPSFVTVEGVKPRKQAPVAAK
AAADEAPLPEPKQLALDGMHNILITGIGGTGVITIGALIGMAAHLEGKGVSVLDMTGMSQ
KNGSVTSHVRIARDAAQLKAQRIPTGEADLILGCDMLTAGAPDAIARMRPGRTYALVNTF
EQPTGHFAQQPDWEFPAAQVRALIEESVEGRADFIDATQLATRLMGDAIAANLFLLGLAF
QKGFVPLSAEALDKAIEINGVAVKANQAAFRWGRKAALDLAAVTREASPRKVVALQRPQS
FEALVKDRTAFLASYQNAAYAQRYAELVERVRVLEQRERGGTVLAKAVASGLFKLMAYKD
EYEVARLYTDPRFMEKLAEQFEGKPVLRFNLAPPVLGRRDAEGRAVKTSFGPWMMGAFRV
LAKLRGLRGTAFDVFGRTAERRMERQLIEDYRAMVEDLLARFDRIDFDTALSLARLPEQI
RGFGYVKEESVVAARVRWQALAKQLEAAPQRERELSAAAS