Protein Info for GFF186 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 387 transmembrane" amino acids 27 to 45 (19 residues), see Phobius details amino acids 65 to 87 (23 residues), see Phobius details amino acids 104 to 122 (19 residues), see Phobius details amino acids 149 to 165 (17 residues), see Phobius details amino acids 177 to 196 (20 residues), see Phobius details amino acids 205 to 230 (26 residues), see Phobius details amino acids 239 to 259 (21 residues), see Phobius details amino acids 279 to 297 (19 residues), see Phobius details amino acids 313 to 335 (23 residues), see Phobius details amino acids 341 to 365 (25 residues), see Phobius details PF01757: Acyl_transf_3" amino acids 22 to 358 (337 residues), 70.1 bits, see alignment E=9.1e-24

Best Hits

KEGG orthology group: None (inferred from 61% identity to sno:Snov_3168)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (387 amino acids)

>GFF186 hypothetical protein (Xanthobacter sp. DMC5)
MPVSGTHLIDPPHVEPPLGRVTSLDGLRGFASCTVAIFHFFYAFTPGPFRSWGRTGFSVS
DTPLAVLWNGHFSVAVFFALSGFVLAASAPRTLKEAPLLIGLRYFRLALPALAGSLIAWF
WITGFPDAGKAAQALSGSSWFRWTHQPPLPPLWVAAWEGAVGVFVQKGQPLFDNPLWTMR
IELTGSFLIYGGYALIRGPARVPTLVAGLVGLAIAGNFSLAAFCGGALLFELRGWLRPLP
MWGTLLALLGLMLGGTYPGHADGPGLADAILSRLGADGWREAGALLVIIAFLTTPWLREL
FERPALQHLGELSFPLYLVHVPLIVGPAAWAFVYFSPLGVAGLALLFALTALATFLIASL
FLVLVERPVLDGLHAVRKWGRARLAEA