Protein Info for GFF1853 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 238 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 42 to 62 (21 residues), see Phobius details amino acids 68 to 88 (21 residues), see Phobius details PF02308: MgtC" amino acids 19 to 140 (122 residues), 121 bits, see alignment E=3.9e-39 PF21770: MgtC_SapB_C" amino acids 156 to 232 (77 residues), 27.9 bits, see alignment E=2.9e-10

Best Hits

KEGG orthology group: K07507, putative Mg2+ transporter-C (MgtC) family protein (inferred from 73% identity to xau:Xaut_1179)

Predicted SEED Role

"Mg(2+) transport ATPase protein C"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (238 amino acids)

>GFF1853 hypothetical protein (Xanthobacter sp. DMC5)
VQFVSNFHGVQFLDTVVSLAAAFLFGTLIGAERQYRQRTAGLRTNVLVAVGSAAFVDLAS
SLGGPTDAMRVAANVVTGVGFLGAGVIMKEGMNVRGLNTAATLWCSAAVGACAGTDRIAE
AGLITFIIIAGNTVLRPVARAIDRAPLDARRSEVSYEVRLTVDSAAAPDLRDVLIDTLEA
EKYLVSDVDEEPGTDGAVVLVAKLVTTSVVPAELDAITDRLAKRPHTRHATWESVTEE