Protein Info for GFF1851 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: L-rhamnonate transporter (predicted by genome context)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 429 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details transmembrane" amino acids 54 to 74 (21 residues), see Phobius details amino acids 82 to 101 (20 residues), see Phobius details amino acids 107 to 129 (23 residues), see Phobius details amino acids 141 to 163 (23 residues), see Phobius details amino acids 175 to 197 (23 residues), see Phobius details amino acids 240 to 261 (22 residues), see Phobius details amino acids 273 to 295 (23 residues), see Phobius details amino acids 307 to 325 (19 residues), see Phobius details amino acids 331 to 350 (20 residues), see Phobius details amino acids 361 to 383 (23 residues), see Phobius details amino acids 395 to 415 (21 residues), see Phobius details PF07690: MFS_1" amino acids 22 to 381 (360 residues), 161.8 bits, see alignment E=1.1e-51

Best Hits

Swiss-Prot: 92% identical to RHMT_ECOLI: Inner membrane transport protein RhmT (rhmT) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to sei:SPC_1421)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (429 amino acids)

>GFF1851 L-rhamnonate transporter (predicted by genome context) (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MSITLLDGVVKKNRARLIPFMLALYVLAFLDRSNIGFAKETYQIDTGLSNEAYALGAGIF
FVVYAFLGVPANLLMRKFGARTWIGTTTLLWGFLSAAMAWADSEAKFLIIRTLLGAAEAG
FFPGMIYLTSQWFPQRNRASIMGLFYMGAPLALTLGSPLSGALLEMHGFMGHPGWFWMFV
IEGLLAIGAGIFTFFWLDDTPQQARFLSLEEKNALIRQLASEEEKKVTSRLADALRNGRV
WQLAIIYLTIQVAVYGLIFFLPTQVAALLGTKVGFTASVVTAVPWVAALLGTWLIPRYSD
RTGDRRNVAAVTLLAAGIGIGLSGLVSPVLAILALCVAAVGFIAVQPVFWTMPTQLLSGT
ALAAGIGFVNLFGAVGGFIAPILRVKAETLFASDAAGLLTLAGVAIIGSLIIFTLSVNRP
VAQSGAAHH