Protein Info for GFF1839 in Variovorax sp. SCN45

Annotation: Integral membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 259 transmembrane" amino acids 12 to 45 (34 residues), see Phobius details amino acids 51 to 67 (17 residues), see Phobius details amino acids 81 to 100 (20 residues), see Phobius details amino acids 107 to 127 (21 residues), see Phobius details amino acids 139 to 162 (24 residues), see Phobius details amino acids 176 to 194 (19 residues), see Phobius details amino acids 200 to 220 (21 residues), see Phobius details amino acids 233 to 256 (24 residues), see Phobius details PF01925: TauE" amino acids 15 to 246 (232 residues), 76.3 bits, see alignment E=1.5e-25

Best Hits

KEGG orthology group: None (inferred from 91% identity to vap:Vapar_5696)

Predicted SEED Role

"FIG00761799: membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (259 amino acids)

>GFF1839 Integral membrane protein (Variovorax sp. SCN45)
VQLIFSEAGPVLVFMACVALATYAQNLTGFAFSLILLGLVSVFHIASVSDTANAATVLSL
INAWTYFRARPGVVPWRLMKPALNGSTVGVIVGLMLLTWLSGGAVNWLRGLLGVSILGCA
VLLVMQGRPLPAVSGPRSFAVIGGLSGVLGGLFSSSGPPIVFHMYRQPLDRELVRRALLL
MFAFNSLVRLVIVVPTGHFSWYSALLAGCAMPVVYGATRLHHRLPNKLKPRTLKWLVGGL
LAAAGSTLIATAWVAIAQG