Protein Info for PS417_09340 in Pseudomonas simiae WCS417

Annotation: spermidine/putrescine ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 329 PF00005: ABC_tran" amino acids 20 to 161 (142 residues), 135 bits, see alignment E=4.5e-43 PF13304: AAA_21" amino acids 107 to 194 (88 residues), 29.6 bits, see alignment E=1e-10 PF08402: TOBE_2" amino acids 257 to 324 (68 residues), 32.4 bits, see alignment E=1.2e-11

Best Hits

Swiss-Prot: 47% identical to Y4FO_SINFN: Uncharacterized ABC transporter ATP-binding protein y4fO (NGR_a03670) from Sinorhizobium fredii (strain NBRC 101917 / NGR234)

KEGG orthology group: K02052, putative spermidine/putrescine transport system ATP-binding protein (inferred from 98% identity to pfs:PFLU2035)

Predicted SEED Role

"ABC transporter, ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U7E9 at UniProt or InterPro

Protein Sequence (329 amino acids)

>PS417_09340 spermidine/putrescine ABC transporter ATP-binding protein (Pseudomonas simiae WCS417)
MSFVSVQHLQKSYAGTPVFSDINCEVAKGEFVTLLGPSGCGKSTLLRCIAGLTSVDSGKI
LLDDQDIVPLSPQKRHIGMVFQSYALFPNMTVEQNVAFGLRMQKVNADDSHKRVQEVLQL
VELKDLAGRYPHQMSGGQCQRVALARSLVTRPRLLLLDEPLSALDARIRKHLREQIRQIQ
RELGLTTIFVTHDQEEALTMSDRIFLMNQGKIVQSGDAETLYTAPVDVFAAGFIGNYNLL
DADKATQLLQRPISSRIAIRPEAIELSRTGELDALVRSHSLLGNVIRYRIEARGVELVVD
VLNRSADDLHPDGQRLALSIDPSALCEVA