Protein Info for GFF1836 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1010 transmembrane" amino acids 770 to 787 (18 residues), see Phobius details PF07495: Y_Y_Y" amino acids 703 to 761 (59 residues), 45.9 bits, see alignment 8.6e-16 PF07730: HisKA_3" amino acids 808 to 872 (65 residues), 40.1 bits, see alignment 9e-14 PF02518: HATPase_c" amino acids 913 to 1005 (93 residues), 46.7 bits, see alignment E=7.9e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1010 amino acids)

>GFF1836 hypothetical protein (Sphingobium sp. HT1-2)
MEGASVPLTGGLYRIGPQRYGCRFLPPQGPHVATEQKIMKRRAIITAIAAMLLAQPGQAL
DPSQSISQLRYSRWTLKDGAPGNVRALAQGKDGYLWLGSSTGLYRFDGIRFERMLADRDD
PRRSLQVTALLAARNGDIWVGHDFGGIALYRDGHLRDANPWPAQGGVAGIVEARDGSIWV
GAEARGKMLLSRYQNGRWRRYGAQQGVTDGMMGPMLAASDGSLYLALPPHLLRLVPGAAR
FAPLAMQVAPFAALDEDRAGRIWLADDNGIRPISGGQAAARLDPVNTPYVTRHIHVDRQG
TAWITGQNGGLARLPAGGDKVEIAAGHMPLSLAALEDREGNIWVGTETGVVRYAAASLIG
AGEEALVTGFVAPARSAHIFYAGIGGVYRVGPGQRQPRLIFPRADIGVLCGDDRQLLAIS
LEGAFLLDLDDRGDVRRTTSVEGPLSVSCARDDRGQFWTGMDRLYRLDGGQLVPAKGAAG
QPGGTITLLRPDGHGGLIAGRSRRGLLRIRDGEQMALLPAGTSPIGSILTLRTDGDQWLL
GGMKGLARLKGGRLQSLGERTHPYLAGITGIARTADGWTWINGATGIVRMRSDALDKGLA
QPDRPIPYQRVGQEADYRARSNLFEANDIALDRDGQLWFATDQGLARTDPARPARNGVPP
PVAIRSLRVDGKAYPLTAGSIALPAHSGRVQIDYSALSLTDAAQNRFRYRLEGSGTGWFD
AGTERQALYTNLAPGQYRFHVIAANNDGVWNRQGAALAFEIAPAFYQTRWFRILCISLIL
LAGWLLYRRRLHVVTERARSRVEAQLTERERIARELHDTLLQGFQGLMLRFQAVVELLPR
GERARTELEGALDRAEDVLVDSRERVHSLRQALQPVAMAVRLRALLDEMVGDRLDWRVEE
AGTVRLVCAPVADEMMRIAREAISNSLRHAAARTIIVELHHGTDRLSLAIIDDGIGLSAA
VLAAGSREGHYGMVGMRERAQRMDGAVEIISTTRTGTTIRVTVPARVAYL