Protein Info for GFF1832 in Variovorax sp. SCN45

Annotation: TRAP transporter solute receptor, unknown substrate 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 351 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF03480: DctP" amino acids 44 to 321 (278 residues), 111.2 bits, see alignment E=3.1e-36

Best Hits

KEGG orthology group: None (inferred from 89% identity to vpe:Varpa_4525)

Predicted SEED Role

"TRAP transporter solute receptor, unknown substrate 3"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (351 amino acids)

>GFF1832 TRAP transporter solute receptor, unknown substrate 3 (Variovorax sp. SCN45)
MTIAHRPRRTALAPTAIAIAATAALALCAPATQAQDKPVQLKLSSWVPAQHPLNPALQAW
ADDIKKESGGTITAILFPSEQLGKAFDHYDMARDGIADFSYVNPGYQPGRFPVMAGASLP
FLFSNGKEGSAAIDAWYRNYAAKEMKDVKYCFAFVHDPGTFHSRKKIVVPGDVKGLKVRP
ATSTVGQLITSLGGTNVQASAPESRDMLERGVADAITFPWGSIGLFGIDKVVKYHMDAPL
YVTPFVWVMNKGKYDAMSTAQKKVIDDHCTSEWAQKVAGPWADFEFAGHAKMAALPGHEI
YKLTPEQLDAWRKAAAPSEAQWAESVKKVGEDPKAVMDALKASLAKYKSAL