Protein Info for GFF1810 in Variovorax sp. SCN45

Annotation: Histidinol phosphatase and related hydrolases of the PHP family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 560 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 80% identity to vpe:Varpa_4543)

Predicted SEED Role

"Histidinol phosphatase and related hydrolases of the PHP family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (560 amino acids)

>GFF1810 Histidinol phosphatase and related hydrolases of the PHP family (Variovorax sp. SCN45)
MFSSFSIAPPFRRTLFSTLAVGTLMLPGCGGGSDGPGFVPLPTATAPAPAPAPAPAPAAA
PTGRWTIGDLHIHTMQSDDTQQISTLDQVLAKAFDQFGLDWAAISDHLRMSSYDNNGNKL
ATPIPFSEGMARYQVPRIKALQADGKYADKTIFASFEWDMPSHDHGNVGLLTDNPMSAAA
LKAANQFEYLFTNRPASAFAPEDVAAWGPKAGTGYDTHAETLAAISWLKKNYPDTSYLQI
NHPSRNPGKYTIAQLREMNDLAPNIVFSLEGMVGNQMEPDRGGYASDYTPANLPSRVYGG
VDYLVAKLGGTWDALLSEGRHIWNVADSDYHFTISQGQYTSGYAPGEYAKNHLWGDIKEP
KSLLAAMRSGKLFAVNGDLINALDFKVQSAKGAGEMGSDVAAKAGEDLKITIRFKSPERN
NFEYQIGSGVLANVKPVVDHIDLIAGDVTGLEKPGTAGYSRDTNPSTRVVKRFTRNDWKL
DADGYFAVSYTVKAGGNQYFRLRGTNLGTDVPGETAAGEPLPDAKVVVADNVARFNAINA
RNYADLWFYSNPVFVKVAAQ