Protein Info for GFF1804 in Variovorax sp. SCN45

Annotation: Uncharacterized UPF0118 membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 372 transmembrane" amino acids 9 to 27 (19 residues), see Phobius details amino acids 33 to 51 (19 residues), see Phobius details amino acids 60 to 84 (25 residues), see Phobius details amino acids 158 to 176 (19 residues), see Phobius details amino acids 214 to 233 (20 residues), see Phobius details amino acids 239 to 268 (30 residues), see Phobius details amino acids 273 to 294 (22 residues), see Phobius details amino acids 310 to 339 (30 residues), see Phobius details PF01594: AI-2E_transport" amino acids 12 to 339 (328 residues), 168.1 bits, see alignment E=1.5e-53

Best Hits

KEGG orthology group: None (inferred from 90% identity to vpe:Varpa_4567)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (372 amino acids)

>GFF1804 Uncharacterized UPF0118 membrane protein (Variovorax sp. SCN45)
MNSPQLQRGVFLALLAAVTAAFIWVLLPFFGAVLWGVALAILFTPLFRWLLRKMPGKLNA
AALLTLAICLFIVILPLAMVGVSLVQEVALVTQNIRSGQINFAAYFQQILDASPQWLLNL
VERFNLGDMAAWQARISAAAGQASQIIASQALAIGQNTFDFVVSFFVMLYLLYFLLRDGA
ALSKRMRDAVPLAKPHTHYLLNKFTTVIRATVKGNVAVAIAQGTLGGLAFWFLGVQGALL
WAVLMAFLSLLPAVGAALIWGPVAIYFLATGHFWQGGVLIFVGVFVIGLVDNILRPLLVG
KDTQMPDYIVLMSTIGGMAIFGINGFVIGPVIAALFMAAWSLFVDSGHVGTGHDEPAEGT
QPTQGTENKKRG