Protein Info for GFF1804 in Pseudomonas sp. DMC3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 388 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 32 to 54 (23 residues), see Phobius details amino acids 69 to 89 (21 residues), see Phobius details amino acids 99 to 123 (25 residues), see Phobius details amino acids 133 to 151 (19 residues), see Phobius details amino acids 157 to 175 (19 residues), see Phobius details amino acids 196 to 222 (27 residues), see Phobius details amino acids 234 to 257 (24 residues), see Phobius details amino acids 265 to 288 (24 residues), see Phobius details amino acids 301 to 320 (20 residues), see Phobius details amino acids 328 to 351 (24 residues), see Phobius details amino acids 358 to 378 (21 residues), see Phobius details TIGR00367: K+-dependent Na+/Ca+ exchanger homolog" amino acids 33 to 337 (305 residues), 259.3 bits, see alignment E=2.3e-81 PF01699: Na_Ca_ex" amino acids 39 to 175 (137 residues), 106.6 bits, see alignment E=6e-35 amino acids 199 to 339 (141 residues), 116 bits, see alignment E=7.4e-38

Best Hits

KEGG orthology group: K07301, inner membrane protein (inferred from 88% identity to pfo:Pfl01_0833)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (388 amino acids)

>GFF1804 hypothetical protein (Pseudomonas sp. DMC3)
MRSACCAAAPHGFACRPSTDGALTIFGLADLPLINVIELLSGLVLLLIGAELMVRAAVRL
AERLRVRPLIIGLTIVALGSSAPQMTVSLQAALTDNPDIAVGSVVGSGIFNILVTLGLSA
LIIPLRVSRQLVRLDIPLMIGASLLVFILAWNKDLGRFDGVLLLGALALYLGLLFRQSRH
STRPHTERPTETQQSWLISVLMILAGLAMLVFAGRLLLGAAVVVATDLGLSERVIGLTVV
AVGTSLPELATSLIAALRGQRDIAVGNVIGANLFNLLGVLGLTALLAPTPLSVSPNALDF
DLPVMLGVAALCLPVFYSGYRVTRAEGLLLLGLYLVYGLHVVSFTTGMPLAGKLERLMLF
YVLPALLTFLLFTSIRAWRRQHHKRDVP