Protein Info for GFF1800 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 85 to 102 (18 residues), see Phobius details amino acids 115 to 135 (21 residues), see Phobius details amino acids 147 to 168 (22 residues), see Phobius details amino acids 174 to 195 (22 residues), see Phobius details amino acids 227 to 244 (18 residues), see Phobius details amino acids 250 to 269 (20 residues), see Phobius details amino acids 281 to 300 (20 residues), see Phobius details PF06181: Urate_ox_N" amino acids 4 to 296 (293 residues), 431.7 bits, see alignment E=8e-134

Best Hits

KEGG orthology group: None (inferred from 85% identity to xau:Xaut_3294)

Predicted SEED Role

"conserved hypothetical membrane protein, paralogue of Y20848"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (407 amino acids)

>GFF1800 hypothetical protein (Xanthobacter sp. DMC5)
MEPILHEYGSLLLRWTHIIAGMAWIGSSFYFMHLDASLKACADIPPGKGGEAWEVHGGGF
YQVKKYLVAPDFLPEELGWHKWQSYATWITGFFLLIWVYYYQSSIFLIDPAVMNLKPITA
LVIGLGGLAAGWIAYDQLCRSKLGDKPLVVGIIVFAGVVLAAFLYQQVFSPRAAFIHTGA
LMATIMSGNVFFVIIPNQHKVVAALKAGEVPNPYYGKTAKLRSGHNNYFTLPVVFLMISN
HYPLTYSTPYAFVIVALALVAGTVIRYFYNERHAGRGDKAWCWLVAAVCLILAIFISATT
TPAGRMALGLPPLVSPAFAKSGPAVDVPVDIQNVVMGRCAMCHAAEPVYEGFAVPPRGIL
LDTPEAIAKNRKLILVQAGLTHAMPPNNITELSDEDRAMLKEWASGK