Protein Info for GFF1795 in Variovorax sp. SCN45

Annotation: Hydantoin racemase (EC 5.1.99.5)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 263 PF01177: Asp_Glu_race" amino acids 30 to 214 (185 residues), 105 bits, see alignment E=2.5e-34

Best Hits

KEGG orthology group: None (inferred from 53% identity to kvu:EIO_3210)

Predicted SEED Role

"Hydantoin racemase (EC 5.1.99.-)" in subsystem Hydantoin metabolism (EC 5.1.99.-)

Isozymes

Compare fitness of predicted isozymes for: 5.1.99.-

Use Curated BLAST to search for 5.1.99.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (263 amino acids)

>GFF1795 Hydantoin racemase (EC 5.1.99.5) (Variovorax sp. SCN45)
MTLRVRWIRTVGNDTYNERFAGEFAEVKNPGTEVEVVSLRNPSVRHHVEYQSYEALLGAD
IVRVVRDAALKKFDAVVLGCFYDPVLVEAREISGETVVVAPCQASFEVASNLAQKVSIIV
GRRKWVPRIESRVREYGHGHLLASCRALQLGVEDFQRDRDETVRRMVEQGRRAIDEDGAE
ALILGCTLEFGFYKQLQDVLGVPVIDSALAAFKRAEALADTKQRFGWKPSRVGGCEPPPE
AQELLAWNVFDPALVPVASPFNG