Protein Info for GFF1793 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 545 transmembrane" amino acids 31 to 57 (27 residues), see Phobius details amino acids 62 to 84 (23 residues), see Phobius details amino acids 96 to 118 (23 residues), see Phobius details amino acids 124 to 143 (20 residues), see Phobius details amino acids 177 to 193 (17 residues), see Phobius details amino acids 200 to 221 (22 residues), see Phobius details amino acids 233 to 254 (22 residues), see Phobius details amino acids 283 to 304 (22 residues), see Phobius details amino acids 310 to 332 (23 residues), see Phobius details amino acids 339 to 358 (20 residues), see Phobius details amino acids 363 to 382 (20 residues), see Phobius details amino acids 408 to 429 (22 residues), see Phobius details amino acids 458 to 467 (10 residues), see Phobius details amino acids 480 to 507 (28 residues), see Phobius details amino acids 519 to 540 (22 residues), see Phobius details PF03169: OPT" amino acids 35 to 254 (220 residues), 31.9 bits, see alignment E=3e-12 amino acids 236 to 538 (303 residues), 51.2 bits, see alignment E=4.4e-18

Best Hits

KEGG orthology group: None (inferred from 57% identity to ebi:EbC_03890)

Predicted SEED Role

"FIG01055826: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (545 amino acids)

>GFF1793 hypothetical protein (Variovorax sp. SCN45)
MTMNHEVTAAVPPRDDPSAHPSSELHPKALAPANLILTVVLSVFGAIVGIQMLASLGITP
STSLIGALAAMTLARVPLAMFRGLRSVHAQNLAQTSISSATFGAANSLFLPIGIPFLFGL
PDMVMPMLVGVSLAMLLDAWLLYRMFDTPAFPASNPWPLGIAAAEAIKAGDGGGKQAWLL
LGGLATGVAGAVIKLPMSAFGVALIGGLGAMIAFGVGLLVRGYSTPLFGLDIGALYVPHG
MMIGAGIVALAQVGRVVLGKRRVAPGGPATQEARGATALGRSLRLGSVGYLAIMVLLAVG
TGVYTGMSPGMLVCFVIYGTFAAFVHELIVGIAAMHSGWFPAFAVALISLLIGILIGFPP
EALVVLAGFCAATGPAFADMGYDLKAGHLLRGETSGTPFETEGRREQMIAGMVGFAVAIV
VVACSYKLFFANHQTAPINAAYVAAIKAGISGDTARNLALWAIPGALLQIVGGARQQLGV
LFATGLLIASPMAGWMVAAGIACRLVAHRVLGATAREKLEVFAGGVIAGDALYSFFSGVV
KSLRK