Protein Info for GFF1787 in Pseudomonas sp. DMC3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 transmembrane" amino acids 7 to 25 (19 residues), see Phobius details amino acids 33 to 52 (20 residues), see Phobius details amino acids 68 to 87 (20 residues), see Phobius details amino acids 99 to 122 (24 residues), see Phobius details amino acids 130 to 153 (24 residues), see Phobius details amino acids 165 to 184 (20 residues), see Phobius details amino acids 198 to 214 (17 residues), see Phobius details amino acids 229 to 253 (25 residues), see Phobius details amino acids 275 to 311 (37 residues), see Phobius details PF13593: SBF_like" amino acids 9 to 318 (310 residues), 348.8 bits, see alignment E=3e-108 PF01758: SBF" amino acids 41 to 213 (173 residues), 49.8 bits, see alignment E=3.4e-17

Best Hits

Swiss-Prot: 69% identical to Y2026_PSEAE: Uncharacterized protein PA2026 (PA2026) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K14347, solute carrier family 10 (sodium/bile acid cotransporter), member 7 (inferred from 95% identity to pfo:Pfl01_3255)

Predicted SEED Role

"Sodium/bile acid symporter family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (332 amino acids)

>GFF1787 hypothetical protein (Pseudomonas sp. DMC3)
MTRPRFLPDNFTLTLIGVVLLASFLPASGQVAVGFGWLTNIAIALLFFLHGAKLSRESII
AGAGHWRLHLLVFGLTFVLFPILGLALKPLLSPLIGDQLYMGMLYLCALPATVQSAIAFT
SLARGNIPAAICSAAASSLFGIFLTPLLVTLLLNVHGDGGSTLDAIVKISVQLLLPFIAG
QIARRWIGAWVGRNKNWLKFVDQGSILLVVYGAFSEAVNEGIWQQIPLFELLGLVVVCCI
LLTLVLVASILLSKAFGFNQEDRITILFCGSKKSLATGVPMAQVLFAGSTIGVLILPLML
FHQIQLMVCAVLAQRYAKRPESVPDLMAQVDP