Protein Info for GFF1759 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Putative mandelate racemase STM3833

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 396 PF02746: MR_MLE_N" amino acids 20 to 120 (101 residues), 71.5 bits, see alignment E=7.1e-24 PF13378: MR_MLE_C" amino acids 153 to 385 (233 residues), 193.5 bits, see alignment E=4.1e-61

Best Hits

KEGG orthology group: None (inferred from 99% identity to sty:STY3945)

Predicted SEED Role

"Putative mandelate racemase STM3833"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (396 amino acids)

>GFF1759 Putative mandelate racemase STM3833 (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MKITSVDIIDVANDFASATSKWRPVVVKINTDEGISGFGEVGLAYGVGASAGIGMAKDLS
AIIIGMDPMNNEAIWEKMLKKTFWGQGGGGIFSAAMSGIDIALWDIKGKAWGVPLYKMLG
GKSREKIRTYASQLQFGWGDGSDKDMLTEPEQYAQAALTAVSEGYDAIKVDTVAMDRHGN
WNQQNLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIAEMHAFTDTTSAIQFGRMIEELGI
FYYEEPVMPLNPAQMKQVADKVNIPLAAGERIYWRWGYRPFLENGSLSVIQPDICTCGGI
TEVKKICDMAHVYDKTVQIHVCGGPISTAVALHMETAIPNFVIHELHRYALLEPNTQTCK
YNYLPKNGMYEVPELPGIGQELTEETMKKSPTITVK