Protein Info for GFF1757 in Pseudomonas sp. DMC3

Annotation: Putative tartrate transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 455 transmembrane" amino acids 24 to 42 (19 residues), see Phobius details amino acids 55 to 74 (20 residues), see Phobius details amino acids 89 to 108 (20 residues), see Phobius details amino acids 115 to 137 (23 residues), see Phobius details amino acids 149 to 171 (23 residues), see Phobius details amino acids 182 to 203 (22 residues), see Phobius details amino acids 251 to 272 (22 residues), see Phobius details amino acids 292 to 309 (18 residues), see Phobius details amino acids 317 to 333 (17 residues), see Phobius details amino acids 339 to 360 (22 residues), see Phobius details amino acids 371 to 394 (24 residues), see Phobius details amino acids 407 to 425 (19 residues), see Phobius details PF07690: MFS_1" amino acids 30 to 391 (362 residues), 155.8 bits, see alignment E=7.5e-50

Best Hits

KEGG orthology group: None (inferred from 94% identity to pfo:Pfl01_3284)

Predicted SEED Role

"D-galactarate permease" in subsystem D-galactarate, D-glucarate and D-glycerate catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (455 amino acids)

>GFF1757 Putative tartrate transporter (Pseudomonas sp. DMC3)
LKTLQSPTDITVLARAAAKVKRHVLPLFVVMFIVNYIDRVNIGFVRSHLETDLGIGAAAY
GLGAGLFFIGYALFEVPSNMLLQRYGARVWLTRIMFTWGAAAMAMAFVQGETSFYVLRFI
LGAAEAGFFPGIIYYFTQWLPASERGKTMAVFLSGSAIASVTSGPVSGALLHISGLGMHG
WQWMFLIEGAASVVLCAFVWFWLQSHPRQAKWLSEEERDALVAAIAEEQRAREAVQVAKP
SMFKLLADRQIALFCFIYFSIALTIYGATFWLPSMIKKMGNLGDFQVGLLNSIPWIISIV
AMYGFAAMAGKWKFQQAWVALTLVIAAVGMFMSTTGGPVFAFVAICFAAIGFKAASALFW
PIPQSYLDARIAAAVIALINSIGNLGGFVAPTAFGILEQTTGSIEGGLYGLAATSLIAAV
VIFFARTAPGAKGKTPVKPSDEAAVVAPARPAASH