Protein Info for GFF1747 in Variovorax sp. SCN45

Annotation: FIG00799528: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF10340: Say1_Mug180" amino acids 124 to 249 (126 residues), 43.2 bits, see alignment E=4.9e-15 PF20434: BD-FAE" amino acids 132 to 222 (91 residues), 30.7 bits, see alignment E=4.7e-11 PF07859: Abhydrolase_3" amino acids 137 to 337 (201 residues), 139.8 bits, see alignment E=2.2e-44 PF00326: Peptidase_S9" amino acids 185 to 364 (180 residues), 32.5 bits, see alignment E=1.3e-11

Best Hits

KEGG orthology group: None (inferred from 61% identity to mrd:Mrad2831_0843)

Predicted SEED Role

"FIG00799528: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (365 amino acids)

>GFF1747 FIG00799528: hypothetical protein (Variovorax sp. SCN45)
MNASIPRVAALLAALVLAACAQTPQTYAEKAAAQAAANAQPGARRSPAQVSPAPTNEVSP
QMQALIAGPYPSHFNAAPQNAAEWKDLINRRAAPVIAAIPALKEKLGVSVQAVKIAGVNA
FIVTPNKIAPGNEKRLLMHVHGGGYVFGPGESALPEAMLLAGFGGYKVVSVDYRMPPDYP
YPAAMDDAMAVWKELLKTNKPQNMAVFGTSTGGAMTLALVLRAKAERVPLPGAIAPGTPW
SDIAKIGDSYQTNEWIDNILVTWDGWLGRAALLYANGRDLKDPQLSPIYGDFKGFPPAIL
TTGTRDLFLSNTVRTHRKLRRAGVEAELNVYEGQSHAQYGIDPNAPETREAFGDIARFFD
RHLGR