Protein Info for GFF1720 in Variovorax sp. SCN45

Annotation: Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1191 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 40 to 57 (18 residues), see Phobius details amino acids 118 to 139 (22 residues), see Phobius details amino acids 145 to 164 (20 residues), see Phobius details amino acids 218 to 243 (26 residues), see Phobius details amino acids 248 to 251 (4 residues), see Phobius details amino acids 254 to 272 (19 residues), see Phobius details amino acids 623 to 651 (29 residues), see Phobius details amino acids 657 to 677 (21 residues), see Phobius details amino acids 731 to 773 (43 residues), see Phobius details amino acids 846 to 865 (20 residues), see Phobius details amino acids 871 to 891 (21 residues), see Phobius details PF00664: ABC_membrane" amino acids 6 to 265 (260 residues), 80 bits, see alignment E=8.8e-26 amino acids 624 to 884 (261 residues), 71.5 bits, see alignment E=3.4e-23 PF00005: ABC_tran" amino acids 340 to 487 (148 residues), 102.3 bits, see alignment E=1.2e-32 amino acids 954 to 1103 (150 residues), 102.9 bits, see alignment E=8.2e-33

Best Hits

KEGG orthology group: None (inferred from 87% identity to axy:AXYL_02560)

Predicted SEED Role

"Transport ATP-binding protein CydCD" in subsystem Terminal cytochrome d ubiquinol oxidases or Terminal cytochrome oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1191 amino acids)

>GFF1720 Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2 (Variovorax sp. SCN45)
MRMAGGIFLGLLALAAGIARYVFLGQLLARVFDAAPVKDWIAPAACAGAMVLLRALFDHL
RTVQANRSSADVQQALRARLYDRIVALGPAWFANQRTGGVMLTVVDGVEQLQTFFGQYLP
QVVIAAAAPFAIFAVIAFWDVPTALVFLAAALFALFGPMAVHMLDRRASLARTRSLNEFG
EEFLDAVQGLPTLKSYGQGKAWGERLAARARKLSDSTFWVLSVSLLTRGISDLGVALGAA
LALTVGAWRVAAGDMSVEALLIVLMAGTEIFRPLRDLRSVLHRGMLGQSAAASIHALMDA
WPLTAAPDAQVVAGAPTRLEPTIEFDGVSFSYSPQRPAHQGLSLRIAAGERVGIVGPSGA
GKSTIVRLLLRECVPQAGTIRVGGLDVNRLDTQTLLSHMALVSQDITLFHGTIDDNLRLG
RPDATHEQVRAAARAANIDDFIMALPQGYATAIGERGLQLSGGQRQRVAIARALLRDAPI
LILDEALSSVDTENEALIQQALDRLMAGRTTLILAHRLASVIGADRCLVLDQGRVVEQGP
HAELMRQQGLYHRLMHEQAVNSFSGAAASAAVPVASPRAAGDGDGDAGQGAALRSLDTDA
AQVGWYATLATLLSVVRPWRGTLIATILLGVARVAAFIGVGVLSALVVAAIRDDRATSAL
VVGLLVAAPLAALFHWLESWLAHAMAYQLLADMRVKLYDKLERLAPAYLLQRRSGDLVAL
ATHDVEMVEYFYAHTIAPAIVSVLVPLTVLCFLAVYSWPVALALLPFLAYALVSPINGRR
KIDALGDRARHALGEMSAHTADTIQGLADLTAFQATGRRRVQFLEIADQCRARRLDMLAD
LSRQTAWFEVAMGLGGLAVAAVGALQVAAGALSAGMLPLLVLIALATFLPVSEISQVSRQ
LADTIAATRRLHVVNNEPEPVADGPLPPPEASHGLSLAFERVSFAYPGKPQDTLRDLSFV
VPAGATVAVVGASGAGKSTVASLMLRFWDPRQGTVKLDGVDVRQLRLDGLRERVALVTQD
TYLFNDTLEGNIRLARPDASREELALALQQAALSAFVQTLPEGLATRVGERGMQLSGGQR
QRISIARAFLKNAPVLILDEATSHLDTLSEAQVRGALDVLMRHRTTLVVAHRLSTIRDAD
LILVLENGALAEAGTHEQLLRRQGVYAKLASHQGASFGGPRLQQASGIAAS