Protein Info for GFF1703 in Variovorax sp. SCN45

Annotation: DNA for 3-methylaspartate ammonia-lyase, glutamate mutase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 463 PF07287: AtuA" amino acids 103 to 408 (306 residues), 86.1 bits, see alignment E=1.2e-28

Best Hits

KEGG orthology group: None (inferred from 66% identity to cak:Caul_0486)

Predicted SEED Role

"DNA for 3-methylaspartate ammonia-lyase, glutamate mutase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (463 amino acids)

>GFF1703 DNA for 3-methylaspartate ammonia-lyase, glutamate mutase (Variovorax sp. SCN45)
MTDRLQDTVNVLVPTGALGAGVRESDIEAGLAAGAHAIACDAGSTDSGPAYLATGRSKYS
RDAVKADLAILMRAQARSGLPLLIGSCGTSGCDMALDWMRDIALEIAREHGLHPRIALLY
SEQQAALLKAKAGAGQVTPLAPMTDDGAALFDACEHIVALMGPEPYMTALEAGADIVLGG
RTTDTAVLAALPLLRGAGVGPAWHAGKIAECGGLCTVNSRDGGVMIRVGHDAFEVEPLNA
GNVCTPRTVSAHMLYENSDPFLLHEPGGVLDVTEARYEAVNERVVRVSGSRFLPRPYTMK
LEGASTGAFQTLMLVGIQDRAVLAQIERFIAQMHQLLYQRVSDTMGARAGQFDISLRPYG
WNAVSGLPVEPGAAAPREIGLLFVATAATQELATQIAKTCNPLFFHMPLERNMPLPSYAF
PFSPAEIERGAVYEFMLNHVVHVGHGLELVRTEFVETAELQHA