Protein Info for GFF1699 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Excinuclease ABC subunit A, dimeric form

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 1959 TIGR00630: excinuclease ABC subunit A" amino acids 35 to 1014 (980 residues), 910.3 bits, see alignment E=7.8e-278 PF17755: UvrA_DNA-bind" amino acids 337 to 402 (66 residues), 33.3 bits, see alignment (E = 7.4e-11) PF17760: UvrA_inter" amino acids 1188 to 1294 (107 residues), 82.4 bits, see alignment 3e-26

Best Hits

Predicted SEED Role

"Excinuclease ABC subunit A, dimeric form" in subsystem DNA repair, UvrABC system

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1959 amino acids)

>GFF1699 Excinuclease ABC subunit A, dimeric form (Hydrogenophaga sp. GW460-11-11-14-LB1)
MSDAFLPADSPVGAISTAPEADGRDHPTEGGSGLIRIRGARQHNLKNLDLDIRTGELTVV
TGPSGSGKSSLVFDTLFAEGQRRYVETFSAYARQFLDRMDKPAVDRVDGVPPAIAIDQTN
PVRSSRSTVGTMTELNDHLKLLFARGADLFDRETAQPVRHDSPESIYAELKARAARQGDP
RLVLTFPVELPASTTAEEVEQWLSASGYTRVQAERVVQREVVATVEAKAPAKGKAKPVAS
ESVKVLDVVADRFRIGTVEPARAMEAIEAGLKRGGGKLMVYVLAEEGEPEIWRFSTGLHC
PESDIRYSEPTPSMFSFNSAVGACEACRGFGRVIGVDYGLVIPNDKLTLRAGAVKVFQTP
AWKECQDDMMRHAEAAGIPRDTPWAKLTPEQQHWVKAGSPQWNGKWNQQWYGVDRFFEYL
ESKAYKMHIRVLLSKYRSYTECPSCHGARLKTDSLLWRIGSKAQADAVLPAPKRYLPQGV
KWSRAQLEALPGLCLHDLMLMPLDKLRVFFASLDATLAPAGSDTAAAGQAQALRLLFEEI
NTRIRYLCEVGIGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPSIGLHPRD
MARINDAMLRLRDAGNTLVVVEHDPAVMLAADRLIDMGPGPGERGGSIVFDGTPEAIRSA
DTLTGAYLGSRKTIGMGFKRMVTDSTPRLILEGAREHNLKDVSVEFPLQRLVVVTGVSGS
GKSSLIQDVLAPALLRHFGKSTESPGAHDRLLGADHLSEVVFVDQSPIGKTARSNPVSYV
GAWDAIRALFAEAPLSRQRSYTPAKFSFNSGDGRCPTCGGSGFEHVEMQFLSDVYLRCPD
CDGKRYRPEILEVKIQRGGRSLNVADVLDLTVSEAAALFAGDREVIRVLQPIVDVGLEYV
KLGQPVPTLSGGEAQRLKLAGFLAEASKNSSASRQAVARKGTLFLFDEPTTGLHFDDIAK
LMRSLRKLLDAGHSLVVIEHNLDVIRAADWLIDLGPEGGDAGGLIVAEGPPEAVREHASS
HTAKALREYALAMGEVHEVREGRPMGLQPARARAEGAHAHAIRIVNAKEHNLKNLSVDIP
RGKFNVISGVSGSGKSTLAFDILFNEGQRRYLESLNAYARSIVQPAGRPEVDAVYGIPPT
VAIEQRLSRGGRKSTVGTTTEVWHFLRLLYVKLGTQHCVHDGAAVMPQSADSIAAAILAR
YKGRHIGLLAPLVVNRKGVYTELADWARPRGHTHLRVDGEFLPTTGFPRIDRFKEHTIEL
PVADFVVSADDEAALRRELNKALEIGKGVVHVLTPLDGLAQALAEGVSTRDLGTLEVFST
TRACPICATSYPELDPRLFSYNSKHGWCPDCVGTGVKLSKDQRKALDDSVRDDKEKGREQ
SFAEPEVDDLVDEACPACAGTRLNPQARAVRFAGVGITDVACLSVRDVRTWVQGLMKDLA
LSAREADIARDLLPEIESRLAFLEEVGLNYLTLDRGAPTLSGGEAQRIRLAAQLGSNLQG
VCYVLDEPTIGLHARDNAILLNALHKLGDQGNTLVVVEHDEDTIRRADHIIDIGPSAGKR
GGRVVAQGSVDDLSANADSVTGRYLLHAMKHPLQARRGAPPADEGAHWLRVKGANLHNLN
ELDAAVPLQRLVVITGVSGSGKSTLARDVLLTNVAAAVSQRSTKAGRDAMDKGKYPAWSG
CAGVSGFETVDRVLEVDQTPIGKTPRSCPATYIGFWDTVRKLFADTLEAKARGYGPGRFS
FNTGEGRCPACEGQGMRTIEMSFLPDVKVPCEVCHGARFNPETLAVTWKGKSIGDVLQME
VDEAVDFFASMPNISHPLQLLKDVGLGYLTLGQPSPTLSGGEAQRIKLVTELSKVRDDVT
RRGQKAPHTLYVLDEPTVGLHMADVEKLIRVLHRLVDGGHSVVVIEHDLDVMAEADWIID
LGPEGGNGGGRIVAAAPPDEVVRLGTHTGRVLGPVLART