Protein Info for GFF1696 in Sphingobium sp. HT1-2

Annotation: Excinuclease ABC subunit A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 971 TIGR00630: excinuclease ABC subunit A" amino acids 6 to 947 (942 residues), 1448.2 bits, see alignment E=0 PF17760: UvrA_inter" amino acids 132 to 238 (107 residues), 135.4 bits, see alignment E=1.7e-43 PF17755: UvrA_DNA-bind" amino acids 311 to 422 (112 residues), 122.5 bits, see alignment E=2.5e-39

Best Hits

Swiss-Prot: 70% identical to UVRA_BRUAB: UvrABC system protein A (uvrA) from Brucella abortus biovar 1 (strain 9-941)

Predicted SEED Role

"Excinuclease ABC subunit A" in subsystem DNA repair, UvrABC system

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (971 amino acids)

>GFF1696 Excinuclease ABC subunit A (Sphingobium sp. HT1-2)
MSLTHISVRGAREHNLKGVDVDLPRDSLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLS
AYARQFLEMMQKPDVEHIEGLSPAISIEQKTTSRNPRSTVATVTEIYDYMRLLWARVGIP
YSPATGEPISAQTVSQMVDRVMLLPEGTRFYLLAPVVRGRKGEYRKELAEWQKAGYTRVR
IDGELYLIEDAPALDKKYKHDIEVVVDRLAVNADMATRLADSFEQALKLADGLAFVDLAE
DVVPGREDKAQSAGKMKNAGIPANRIVFSEKFACPVSGFTIPEIEPRLFSFNAPMGACPA
CDGLGERQEFDPELVVPNEALSLKKGAVVPWAKSNPPSPYYMQVLGSLAKEFGFSLDTPW
AELPGEVKLIILHGTGGKPVTLRFVDGKKSYEVEKPFEGVIGNLNRRLAQTESAWMREEL
SKYQTAMPCETCHGARLKPEALAVKIAGEDISVSTRRSVVDALAFFTAMPDALNDQQNQI
ARAILKEIVERLGFLNNVGLDYLNLDRTSGTLSGGESQRIRLASQIGSGLSGVLYVLDEP
SIGLHQRDNDRLLVTLKRLRDLGNSVIVVEHDEDAIRAADYIVDMGPGAGVHGGTIVAQG
TLPELLAHKDSLTADYLNGTRRIEVPAKRRKGSGKKLTVHNARANNLTGVTASIPLGTFT
CITGVSGSGKSSFTIDTLYAASARTLNGARIVAGPHDKITGLENCDKVIDIDQSPIGRTP
RSNPATYTGAFTNIRDWFAGLPEAQARGYKPGRFSFNVKGGRCEACQGDGVLKIEMHFLP
DVYVTCDVCHGARYNRETLEVKFKGMSIADILDMTVEDAVEFFKAVPPIRDKMAMLAEVG
LGYIKVGQQATTLSGGEAQRVKLAKELSRRATGNTLYILDEPTTGLHFEDVRKLLEVLHA
LVEQGNSVVVIEHNLDVIKTADYIIDMGPEGGVKGGEVVAQGTPEQVVKEKRSFTGRYLA
PLLGLEAVAAE