Protein Info for GFF1691 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Rare lipoprotein A precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 144 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF03330: DPBB_1" amino acids 52 to 139 (88 residues), 98.4 bits, see alignment E=1.1e-32 TIGR00413: rare lipoprotein A" amino acids 54 to 141 (88 residues), 134.6 bits, see alignment E=2.3e-43

Best Hits

Predicted SEED Role

"Rare lipoprotein A precursor" in subsystem Peptidoglycan Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (144 amino acids)

>GFF1691 Rare lipoprotein A precursor (Hydrogenophaga sp. GW460-11-11-14-LB1)
MSLKPALTLALATLLWLGGCATRAPDMPDLGSLPDASADDTDTPEATEGVIARGVASWYG
EPFHGRRTASGEVYDMNELTAAHKTLPFGTRVRVRHARTGKEVTVRINDRGPHVPGRIID
LSRAAASALGIVQGGVGRVVLLRD